\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0146000.1

ACTGAATTCACTTTAATAGCACTTCTCATCATGAACTAGTACAACAACATAACTGTCCAGTGGAAATGTGAAATGCATACACCAAGTAATGGTCCATAACATGAACTATATGGATACAACAACGTTCTTATTTCGCTCATATATACATGAAATAAGTCTTGCACGTCTTGGTTACTTAATAGGTGCGATAATCGCCGTAGGCTTTTAGAAGAAGAAAAAAAAGTGAGCCTGCAAAGTTCCTGGGGACAGTTGAAGATCATCGGGCACTCATTGCTGCAACAACTTCAGGGTGGTAGTGGAGCATCTCGTGCCACATCATTTCCCTGATCATATCTGCACTGATGTTCTCGTCTATGTCCAGATCGATAGGCACTTGCGCGGGAGGATTTGCACTTGGATCATACAGAGGGGACATGTAAGGGTGCTCAAGAGCCTCGGTGACACTGATTCTTTTGGTAGGATCAAATATGAGCATCTTCTGTAAAAGATCAATGGCAAGAGGGTGTGCATGCGGATACATACTCGCGAGGGGCACACCGGGAGTGTAGGGGAGGGATTTGATATATCTGCGAGCTTTTGGGTTGTCAATGAACTCCAAGTCAGACTCGCTCATGGTGCCAAGAACATTGACAATGAGCTTGAGCTGATTTAGGCACTCAGTTCCTGGGAAAATAGGTTTCCGACCAAGTAGCTCAGCGAAGATGCAACCAACAGACCAAACATCAATGGAAGTGCCATAGTTGTCACAGCAAAGGAGCAACTCAGGAGCTCTATACCAGCGGGTGACAACATACTCAGTCATAAACTGACCTTTACTACTGTTTGTGCGTGCAAGACCAAAATCACATATCTTGAGATCACAGTTTGCATTAACCAGTAGATTTCCAGGTTTCAGGTCTCTGTGGAGTATCTCTGCTGAATGGAGATATTTCAGTCCTCGAAGCAACTGAAAAAGAAAATATTGGCAGTGATCATTGGAAAGACCCTGAGGTGACTTGATTATCTGATGCAGGTCAGTATCCATGAGTTCATAAACTAAGTACACATCTTTAAAACTCCTCCTGTGTACTGGCATCATTATATCCTTCAAAGCAATAACATTCTCATGGCGGAGATGCCGGAGAAGTTTCAGCTCCCGCAAAGTCCTTAGTGCATCAACACGGTTGTCAAAAACATTGTGTATCTTCTTTATTGCTACTTTCTCGTTGGTCTCACGATTTATGGATGAACAAACAATCCCATAAGCTCCTCGCCCGATGGGCTTGATTGGCACATACTTAGTGTCTATCTCAAACAAAGTTTGCCACATCGAGTAGTAATACTTCCCTTGGTTACCCATCCCATTTGGAGGATCCACCATGATCGCCATTTCCCCGAGACACCGCGAGGGAGGGAGAGGAGCGCGAGGCCGAGACGGGAAGAGCGGATCAGATCGCCACCGCCTCCATCGCCGATCGCCTCGCTCGAATTCGTCGTCGTCGTCGTCGCCGTGGCCGCAGCCGAGGAGGAGAAGAGGAGAAGGGACAGCTTCCCGTGAGGTGTGGAT

Coding Potentia
Explanation CPC Score
noncoding -1.17623
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0146000.1 2 2644809 C T
Osa02LNT0146000.1 2 2643219 A C
Osa02LNT0146000.1 2 2643577 A C
Osa02LNT0146000.1 2 2643594 A G
Osa02LNT0146000.1 2 2644790 T A
Osa02LNT0146000.1 2 2645230 A G
Osa02LNT0146000.1 2 2645419 G A
Osa02LNT0146000.1 2 2645888 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0146000.1 osa-miR5512b Cleavage 4.5 10.478 1 21
Osa02LNT0146000.1 osa-miR416 Cleavage 4.5 11.915 1 21
Osa02LNT0146000.1 osa-miR1440a Cleavage 5.0 24.54 1 20
Osa02LNT0146000.1 osa-miR1866-5p Cleavage 3.5 19.99 1 24
Osa02LNT0146000.1 osa-miR5151 Translation 4.5 9.532 1 22
Osa02LNT0146000.1 osa-miR5487 Translation 3.5 12.127 1 21
Osa02LNT0146000.1 osa-miR5512a Cleavage 4.5 10.478 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0146000.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0146000.1 2 rb2 Physiological trait Eating quality RM236 RM279
Osa02LNT0146000.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus