>Osa02LNT0146400.1

GGAGCTTGCTCCGCGCCTCCTCGATCACGTCGTTGCTCCGCCGCGCCATCTCCCGCCGGCGAGGCTGCTCCTCCTCCGACCTCTTCTCCATCGCCGTCTTCACCCTGCTCCCCTTGAACCTCCGCACCAGCTCGTCGCCGTCGGCGTCGTCGTCACGCTGCTTCTTGATCGCCTCCTTCACCACCGCCACGAACTTGTCATCCTCCTTCACCACCGCGAAGAACTTGTCCTCCTCCTTCACCACCACGACGAACTTGTCCTCCTCCGTCGAGGAGGCGGCGGCAGGCGAGTCGGTGGGCACTGGAGTAGCAGCGGCGTCGCCTTTCTTGGGCTCGTCGTCGTCGACCACCTCCTCCTCTTCGATGATGGTGGTGGCGGTGGTCGCGATCTCCTTCTCCGGCTCCGGCGACTTGATCGTGTTCGGCTCTTCTTCCTCCACCGCCGCGACGGCGATCACCACCGGCGTGTTCGCCTCGTGTATGATCTTCTCCGGGACGACCTCCTGCTGATCTTGCCTTGCGCCGCCGCCATGGACGTCGTCGTCGGTGGTAGTGATCGCATCCAAGGAAGGCACGCTCGCCGACGACTCGGAGCCCTTGCCGTTGACCGAGGCCGAGATGTCGGTCCTGATCGTCATGCAGCTGATGGACAGCGACCTGAGGTGGTGGCGCGACGGCGCCGGGGTGGCGGGCGTCGACGCCGAGGCCCGCGGCGGCTGCTGGTGGTGGCGGCGCGAGGCGTTGGAGCTGGACGGCGGCGAGGTGGGCGCCTTGCCGCTCGCGCTCCGCGGCAGCCGCGACGGCGACGGCGACGTCGACGAGGAGGCCATGGGCTGCTTCGGCGACGACATTGTGATTGTGTTAGGGCAAACGAGAAAAACATATATATTACGATTAAATATGAACTTAGATCTATCTTTCTAAAGCTGGCTCATCTCATGCGGTGTTAAATTTTAAGATGAATCTAATGAAATTATACATAAGAAAAAAAATAGCAAAAAGGAAAGAAAAGACACAAATCCAATTTGCATGGACTTCCCAATTATCTATAATATTCATAAGAAATAAATACCAAGAAGTAAACAAAAGAGACATATCATCTTAATTCACATATACCGTATTTGCTTTTAACGGTTCCACTATTAATCGTGACATATGCAAACATATACTCCGTATTGTGTTGATCACCAAGATTACCAAGATTGATAGTCGTTAAATTCAGTATTTACCCTGATTTTTTTTAGATGATGAACCGATCACAGTAACAAAAGAGAAAGTGATTTATGGATTAAAAAGGCCAAATAAAAAGGCTTCTTGTTTGTTTAGGTTAGACGTTTTAGCTTATAAGCCCAACAAAGAGAGGCCATAATCCAAACTTCAATTAATAAAGAAAACTCACAACAAGATTCTACATCTACATATATATTCTTTTTCTTAAAAAAAGATGCATACAATAATCCTTTTATTCAGCTCCGGTGTATAATGACATAATGAAATCCCTACATGGTAGGTGGCTCATACCGTGATAAATCTTGACGTGCACATATTAGCATTGCTCACACCATAACACACTTGAACAACATCGTACGTATAGCATCTCTCTATTTTTTTTTCAATAACATTAATTGTTTAGCAAGCATCTAATGTGAATCTCATTTTTTTTTTCAAAACTAGAAGAAAGAGTGAATCTCTAACAGAAGCGCAATACAATTATCTATTTTTCTTTTTCCAAAACCAATACATTATTATCACATTTTGTTTTCAATATTCTTGCATTTCAAACAAGCCTCCAAAGACAATAGCCACCAATAACAATAACG

Explanation	CPC Score
noncoding (weak)	-0.378452

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0146400.1	2	2772747	G	A
Osa02LNT0146400.1	2	2772845	A	G
Osa02LNT0146400.1	2	2772874	A	T
Osa02LNT0146400.1	2	2772960	G	A
Osa02LNT0146400.1	2	2773717	T	C
Osa02LNT0146400.1	2	2774397	A	G
Osa02LNT0146400.1	2	2772718	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0146400.1	osa-miR6249a	Translation	5.0	16.752	1	21
Osa02LNT0146400.1	osa-miR6253	Cleavage	5.0	4.456	1	22
Osa02LNT0146400.1	osa-miR6249b	Translation	5.0	16.752	1	21
Osa02LNT0146400.1	osa-miR810b.2	Translation	5.0	15.21	1	21
Osa02LNT0146400.1	osa-miR1858a	Translation	3.0	17.133	1	21
Osa02LNT0146400.1	osa-miR1858b	Translation	3.0	17.133	1	21
Osa02LNT0146400.1	osa-miR2927	Cleavage	2.5	24.778	1	23
Osa02LNT0146400.1	osa-miR5492	Cleavage	3.0	8.279	1	21
Osa02LNT0146400.1	osa-miR6255	Cleavage	4.5	4.991	1	22
Osa02LNT0146400.1	osa-miR5492	Cleavage	4.5	5.165	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0146400.1	2	S29(t)	Physiological trait	Sterility	nan	nan
Osa02LNT0146400.1	2	rb2	Physiological trait	Eating quality	RM236	RM279
Osa02LNT0146400.1	2	qWIJ-2	Morphological trait	Seed	RM233A	RM8

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus