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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0146700.1

TAAGGCCGGGCCCAGTTAAGGTCCAATCTGCCAGGCACCCTCCCTCCCCGCGGCCGGCGCCGCCGCCGCCGCCGCCGCGCCATGCCCGCCGGTGCTCCCCGACTCCGGTCGCCGAATCGAGCCCGCTCTCCCGCCCGGCCTGATCCCTCGCGCTCACCGTAGAATCATTTCCGCGCCAATGCGCGATCTTCTGTTCCTGCCTGCCGCTCTAGGATAACCGTCTCCACTTCCATTTGGGAAACCCTAGAAGTTTATGCGGATACGGCCGACGGCCTCGGATGATCCAGTGATCTGCTGTCCAGAGGTATGCTGCATTCAGTTATTGCTGTTGATTGATCTGGCTTAAGCTTGGGCTATAAGAAATCATCAGACC

Coding Potentia
Explanation CPC Score
noncoding -1.36848
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0146700.1 2 3092200 A C
Osa02LNT0146700.1 2 3092292 T C
Osa02LNT0146700.1 2 3092733 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0146700.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0146700.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus