>Osa02LNT0146800.1

ACCAAGCAAACAAAATTCTTCTCTCTCATTTTCTTTCTAATCCCAGTGTATTCCGATAACGTTTACGTTACAAATTTTGAACCAAATTTTCTCATCTTCTCTACCATTTTCTATCTATTGGTACAACTGAAAGCAGCAGCAGCAGCAGCATCCCCCTTTTGGATACAGAGATGCACGAGAGAGGCGGCGGAAATACCGAATTTTACTCACGGTTTACATGATAAAGTTATTCACATTATCACATAAGAGGAGTATCAAATCCTGAGTGGTGAAAAAGAGATAGAAGAAAACGAAAACAAAAAGAAAAAAAGAAGAAATAATTATCCGTGTCTATGGAGGAGATGGTAGAGAGCTTCTTCGCAGTAGCAGCAATGGCGATGGTTGGATTGGAGCACAGCAATCCAGTACCAGTTCGTCGGTTCTTGCTGCTTGCTGGTTGGTCGTGGTCGTGGTCGTCGTAGGCTAGAGTTCGCCGGAGATTGCTGGAGACGGCTGGTCGTGTGCAGGCTAGAGGTGGAGCAGCGTGTCGCAGCGCCAATCCATCTCGTCGGCTTCGGCGGCGGCGGCGGCGGATGGGGACGAGGCCGGCAGGTTCAGATCGAACGGCAGCCTCGCCCTCCTCATCGCGATCTCCTCCGACGAGGCGAGTAGCCCTCCTCTCTCTCTGACTCTTCCTCTTCCTCTCTTTTGGCTCGTCTCGTCTCCTCCTCCTTCGCCTCGAGCACCTCGACTATGCGTGCGTGCCCGCGCTGTTTGGTCGGCACGCCCACCCCGTCCCGGTGTCACTGAC

Explanation	CPC Score
noncoding (weak)	-0.411467

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0146800.1	2	3164196	A	T
Osa02LNT0146800.1	2	3164212	G	C
Osa02LNT0146800.1	2	3164366	C	G
Osa02LNT0146800.1	2	3164489	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0146800.1	osa-miR5529	Cleavage	4.0	13.689	1	21
Osa02LNT0146800.1	osa-miR171g	Translation	3.0	11.686	1	21
Osa02LNT0146800.1	osa-miR1847.1	Translation	4.5	15.122	1	21
Osa02LNT0146800.1	osa-miR1846a-5p	Translation	4.0	21.616	1	21
Osa02LNT0146800.1	osa-miR1846b-5p	Translation	4.0	21.616	1	21
Osa02LNT0146800.1	osa-miR1846c-5p	Translation	4.0	21.616	1	21
Osa02LNT0146800.1	osa-miR5149	Translation	4.5	6.832	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0146800.1	2	S29(t)	Physiological trait	Sterility	nan	nan
Osa02LNT0146800.1	2	qWIJ-2	Morphological trait	Seed	RM233A	RM8

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus