>Osa02LNT0146900.1

GTTTCATAGCACCTCCTTTTCTAGTTTCAACACAGCCATAAATGCCTCTTGAGGAACATCAACCCTTCCTATTGCTTTCATTCTCTTCTTTCCCTCAGCCTGTTTCTTCAGCAATTTCTTTTTCCTCGATATATCACCCCCATAGCATTTTGACAAGACATCCTTCCTGATGGCTGATAGTGCTTCACTTGCAATGACCTTTGCACCTATACATGCTTGAATAGGTACTCTAAACATTTGCCGAGGTATAAGCTCTTTTAGCTTTTGAGTTAGCGCCCTCCCGACAGAGTATGCCTTATCTCTATGAACAATTGTTGACAGTGCCTCCACAGGATCACCATTGATCTGTATATCCAGCTTTACTAGGTTACTTTCCCTGTACCCGATAAGTGAATATTCCATGCTAGCATATCCTTTACTTCGAGATTTCAGTTGATCGAAAAAATCACCAACCATCTCTGCTAGCGGTAGCTCATAAACAACTGATGCCCTATTTTCTGTGATGAAGTTCATTTCCTTGAATTCACCTCTTCTCTCTTGACCCAGTTCCATTATTGGGCCAATATACTCTTTTGGTGTAAGCATGTCAATCTTGACATATGGCTCTTCGATGGATCTCCGTTTACCAGGTTCTGGAAGCAAGGATGGATTCGAACATTCAACAGTTTCGCCATCGGCTAGGTTGACATGGTAAACTACACTGGGTGCAGTAATTATTAAGTTCAAGTTATACTCTCTCTCGAGCCTTTCCTGCACAATCTCCATATGAAGAAGACCGAGAAATCCACATCTGAAGCCAAAACCCATGGCACTTGAAGATTCTGGTTCAAACTTTAAAGCAGCATCATTTAGTTGAAGCTTTTCCAATGCTTCACGTAACTCCTCAAACTGATCCGCATCTATAGGAAACAAGCCACAAAAAACCATTGGGGTAGCTTGGGAATATCCTGGTAAAGCACATTCTGCTCTTTTTGAAGAATGAGTAATTGTATCACCAACCCTGGCATCTGCAACTGATCTTATGGACGCAGAAAGATAACCGACCTCGCCAGCGTAAAGTTCACTAACTTGCATCTGATTGGGAGATAATACTCCAATTTCATCTGCAACATATTCCTTTCCGCTAGCCATAAAACATATTTTGTCCCCTTTCTTTATACTGCCATCAACAACTCGAAAATATACAATTACACCTCTGTATGGATCATAATAACTGTCAAATATAAGAGCCCTGAGAGGACTTATTGCAGTATTCTGTGGTGGGGGTATCTTAGTCACAATGGCATCTAGTATCTCAGTTATGCCTATGCCCTCCTTTGCTGAGCAACGAATTGCATTACTGCAGTCCATTCCAATTATCTCTTCAATCTCCTGCGCAACACGATCAGGTTCGGCACCAGGAAGATCTATTTTGTTTAGTACCGGTATGATTTCAAGGTCATTTTCCAGTGCAAGATACACATTCGCTAATGTCTGGGCTTCAACACCCTGAGAAGCATCAACGACCAGAAGTGCACCCTCGCAAGCAGCAAGAGAACGGGAAACCTCATATGAGAAATCAACATGGCCTGGTGTATCAATCAAATTCAGGCAGTAGGGCTCATCGTTCATGATGTAGCGCATCCGAGCTGCCTGCAATTTGATGGTGATCCCTCTCTCCCTTTCCAGGTCCATGTTATCCAGGAATTGCTGTTTCATCTCCCTTTTCTGCACCGTCCCCGTGAGCTCAAGCAGTTTATCCGCCAGCGTCGATTTCCCATGGTCGATATGCGCAATAATGCTGAAGTTCCTGATGTTCGAAACGGGAACCTTCTGGAGGCGGTCCTGGCCGGCGTCGGTGGTGGACGCCGGCGAGGAGGCGGGGGCGGCGGGGCAGACGACGCGGCCGCGGGGGGCCGCGGAGAGGGCGCGCGGGCGGGGCGGGGCGGAGGGGAGAGGAGCGGCAGGCCTACGGCGCCCCGGCGCGTGCGGCGACGTCCGCGGCGCCGGCACGGCGAGGCGGGAGGCGGTGGCGGTGGCCATGGGAGGAGGAGGAGCGCGCGAGCTTCTCC

Explanation	CPC Score
noncoding	-1.0409

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0146900.1	2	3144663	C	G
Osa02LNT0146900.1	2	3146079	G	A
Osa02LNT0146900.1	2	3146346	A	G
Osa02LNT0146900.1	2	3146493	T	C
Osa02LNT0146900.1	2	3146569	C	T
Osa02LNT0146900.1	2	3146695	T	A
Osa02LNT0146900.1	2	3147050	T	C
Osa02LNT0146900.1	2	3148717	G	T
Osa02LNT0146900.1	2	3148742	A	C
Osa02LNT0146900.1	2	3149374	C	T
Osa02LNT0146900.1	2	3149413	T	C
Osa02LNT0146900.1	2	3146484	C	T
Osa02LNT0146900.1	2	3147125	C	T
Osa02LNT0146900.1	2	3147180	A	G
Osa02LNT0146900.1	2	3147238	G	A
Osa02LNT0146900.1	2	3149581	A	G
Osa02LNT0146900.1	2	3150010	G	A
Osa02LNT0146900.1	2	3150249	T	A
Osa02LNT0146900.1	2	3150939	A	G
Osa02LNT0146900.1	2	3151188	C	A
Osa02LNT0146900.1	2	3152038	C	T
Osa02LNT0146900.1	2	3146014	G	C
Osa02LNT0146900.1	2	3146417	A	C
Osa02LNT0146900.1	2	3150107	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0146900.1	osa-miR5529	Cleavage	5.0	24.809	1	21
Osa02LNT0146900.1	osa-miR398a	Cleavage	4.5	15.066	1	21
Osa02LNT0146900.1	osa-miR398b	Cleavage	5.0	15.066	1	21
Osa02LNT0146900.1	osa-miR530-3p	Cleavage	4.0	19.02	1	21
Osa02LNT0146900.1	osa-miR815a	Cleavage	4.0	11.9	1	21
Osa02LNT0146900.1	osa-miR815b	Cleavage	4.0	11.9	1	21
Osa02LNT0146900.1	osa-miR815c	Cleavage	4.0	11.9	1	21
Osa02LNT0146900.1	osa-miR1857-3p	Cleavage	5.0	11.785	1	21
Osa02LNT0146900.1	osa-miR1871	Translation	5.0	15.023	1	24
Osa02LNT0146900.1	osa-miR395x	Translation	4.5	12.179	1	21
Osa02LNT0146900.1	osa-miR5152-5p	Cleavage	4.5	15.956	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0146900.1	2	S29(t)	Physiological trait	Sterility	nan	nan
Osa02LNT0146900.1	2	qWIJ-2	Morphological trait	Seed	RM233A	RM8

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus