Transcript

Sequence

>Osa02LNT0147300.1

CTAGCGCTTACATGACATTACAATAATAAAATAAATAGTGTTAAAAATCTATAGAACCTACATCTAATCTCTTAGAGGTTGGACCTATATGCCAGCATCATCCATGAGGGGTTCCAACACGAAGGTGTACGTTGGGCTGGCAGCGATCGACGATGCAGAGGCGAAAATATATTTATAATTGTAGCACTACTTTGTAACAAGTAGACAATTTTCCCGTACAATTTTGCACAGGGCTTGTTGACTTAGATTTTTTTATAGACAACTATTGTCTCCTATTTCTATGTATATTTTTTCCTATATATACGCATTTTGGAGAGTATGATTGATTTGATATATAGCTCATAACTTTTGTTCCTATAGATATGTACAAATATAATAATAACTTTTATAGTACAACAACTATTAGTTAATATAAATTTGATTGCATATCTTGATCAAACAATCTAGATTTTATTCGTTTTCTTCAATTATTGTGATAACATCTTCTAGAAGATGGATATACGGGTTTTCTTTAATTTCGAGCTATCATGTACACAAAGAAGATGGGATATATTGTAGGTGTTAGGGTTGTCTATTGGATCACCTAGGTTTAGATCTAGTCGGGTGGTTCTATTTGTGATGGATGATTGAACAACAATA

Coding Potentia

Explanation	CPC Score
noncoding	-1.30533

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0147300.1	2	3562465	T	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0147300.1	osa-miR396e-3p	Cleavage	5.0	13.988	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0147300.1	2	S29(t)	Physiological trait	Sterility	nan	nan
Osa02LNT0147300.1	2	qWIJ-2	Morphological trait	Seed	RM233A	RM8

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus