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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0147500.1

ACTACACACCACGTGATTTCCTCTCCCAAATCCACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTCGATCCTCCAATTTCCTCTCCCAAATCATCTCGAGTAGTAATCAGTGTATTTTGTTGCTTATTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGATCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTTCGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCCGCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGTCGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGGCCAAACTCAACTCGGATCGAGATCCAGCAAAGGGATCCACCACAAGCGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCATTATATATATTCATTTGGAATGATTACTAATGCTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACAATCAAATTGTCGTCTCGTCTTTTCGATCAAAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATGAATGCCTGAAAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAATTTGGATGTTGTGATTATCTCGGCATCTTATAAGAGTGGATAAAAAATATTTATATACAGTACAGTACATGTTGCTTGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.841279
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0147500.1 2 3581156 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0147500.1 osa-miR5802 Cleavage 4.0 11.847 1 24
Osa02LNT0147500.1 osa-miR1846e Cleavage 5.0 23.894 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0147500.1 2 S29(t) Physiological trait Sterility nan nan
Osa02LNT0147500.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus