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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0148500.2

GGTCGATTAAAGTTGGACGCAAAAACTCATAGTTGCGCTTATTTTAGGACGGAGGTAGCAAGAGAAGCTCTGCAAAATGCCAAACCCGGCTGTTCTGATAGGACGGGCCCACACGACCCGGAAAACCGAGACCAGCCACAAAAACGGGAGATGCCATCCATCCGTCCTTCCGGTTCGATGCATCGGGTCACCTTCCTCCAGCAACAAGCCAACAACGACAAGTCTCGACGAGATTCATGCACGATGAAGTCACGCGTGCGATGAGAAAACCGCACGCGTGTCTGTAGCATGGCAAAACCAGGGATGCGCCACTTGTGCCGCTGCGACTTGAAGCTCACTCGCATAGTACATTCGGTTACTTCCATGTTGCTTTCAGGCCAAAGAGAGTACACGTTTGGTTCAAATTCAACCCGTTATAACTTGGGAGTTGCTTCCTGCGATGTCACGCATGATCTGCCCGCCATGATTCTGCAGGATCAGTAAAGATCCCACTATTCAGCAACCAACTAAATGAGATCCTTTTCCCTGCAGGAGGAGAATGTGCATGTCCAGTTTCACAGAAGAAAGCATATGAATGTCGAGAGGGTTCATCCGCCTCTGAACAACACCTCTACACCAGTATACTTTTTGGCCCATAATGAGAAGGCCCATGTTCCCCTGGCTGTACCACTACCACCTTTCAACAGGTAAATGCGGCTCCAGAATCAACATGTACACTAAAGGACAATGCTGTCCATTATAAATACTGAAAGGATGCTCCACAGAAATGATTGTGTTTCCTCTGAATATTTTTGATAGCTGCGAGAGCTGGCTTCCTAGATGTACGGCCCCACCTTGATCTCTTCGTTACTCTGATTCCTCACTGGTAACACTTATAATCCTAGCTAGGTCTTGGACAATCTCTGACATTGATGGTCTGAATTCTGGTTCCGGCCGAATACAACGGCTGATGATGTCTGCAAAACGTGACAGTACTTTCTCAGAACACTCTCCTTGAATAGAAGGATCAACCATCTTTGATATGGACTCAATGTCATGAAATTGAGAATCAGCCCATCTAACAAGATGTTGTTCAGCACGAGGACGAGAACTGTCATATGGTTTACGGCCAGTGAGAAGTTCTAGCATTACCACGCCAAAACTGTAAACATCACTTCGGTAGGTAAAAGTCCCAGCTTCATGGATTTCAGGAGCTTCATAATTCAGCAGTGCCCTCATGCGACCTGACAACTGTGTAACAGAACCTGACAGCGTCAATTCTGCCAGTCCACATTCAGCGACACGTACTGAGAATCCATTACCAAGGAGCACATTGGCTGGCTCAAAATTCTGGTGCACTACTGGAGGTTCACAGCTCTCATGTAGATAGTCTAAGGCCTTTGCTGCACCAAGAGCAACTTGGAGGCGAGCATTCCATGATAGTGCACCATCCAATTCCTCCCCTTCATGTAGTACATCATGCAGTGTTTTTCTACTGAAATGATTATAAACAAGTAACCTCTGACCATATTCTGCACAGTATCCAACA

Coding Potentia
Explanation CPC Score
noncoding -1.19854
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0148500.2 2 4167490 T C
Osa02LNT0148500.2 2 4165420 A G
Osa02LNT0148500.2 2 4167281 A G
Osa02LNT0148500.2 2 4167576 C A
Osa02LNT0148500.2 2 4166542 T C
Osa02LNT0148500.2 2 4165387 A G
Osa02LNT0148500.2 2 4166630 T G
Osa02LNT0148500.2 2 4167236 A G
Osa02LNT0148500.2 2 4169394 C T
Osa02LNT0148500.2 2 4169799 T C
Osa02LNT0148500.2 2 4170277 A G
Osa02LNT0148500.2 2 4168275 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0148500.2 osa-miR5820 Cleavage 4.0 12.898 1 21
Osa02LNT0148500.2 osa-miR1850.2 Cleavage 4.0 11.361 1 21
Osa02LNT0148500.2 osa-miR812n-5p Translation 3.0 17.44 1 24
Osa02LNT0148500.2 osa-miR2092-5p Translation 4.5 14.356 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0148500.2 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus