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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0148700.1

GCCGGGGATCATCAGGTAAATACATTGCATCCACACACATCACATCCCACCCACGTCACAGTCTTATTCAAAAATGTTTTTCCCAATTTCTATTCCTTTCTTGTTCCACAATTTAAAATGCAATCCTCTTCGCTGTTCTAATTCATTTTTAATCTTACAAATAGAAAAAAATAACCGCGTGATTTCCGGGTGCCAGTAGGTATCTTTGAAAAGGTCTATCTAGTGTGTATACTATTTGCTTTGATGCTTTCATGTTTGGGACTTTTGCTGTGGTGCCCTCTAGATTATGTGTATTTACTACTTTTTACCCCAAAATATTCAAATATGGAGTATATTTGCTTTGGTTACTTGATTACTTCTGCGAATGAATAAGCTCCTACCACTGACTGATTTGTTGCCGCTTAGTTTCCTATATTGTTCTTGTTTTCACATGCTTTCGCAATTTTGCTATTGTATTATTTATATATTGGTTTTTTTAACGATTATTCTGTAAATTAGTTCTATGCTATTAATAACCATGTCGAAATCAAAACGACAAACTTTCGCATACGGACAATCACGCAAAGTTTGCCACACCCCTTTTTTTGGGAGCAAGTTCTTGGTGGTATCACTAGAGCTATAGAGGACCACCTAGAGTAGGGATTACCAACCACTCCCAAACAATTTCTGTTCGTGTTCGTGCACATGTTTGCTGTCGTAAATGTAATACTATTAACATTTACAGAAGGGTCAAATGCATTCTTACATGCATACCACTGCAAAATTACCATTCACACTGGAGATATGGAGTAGCATACAGCAGATTGAAAATTTGTGGTGACAAGATAGATTATGAATTGTTGGTGTGCAAGTGTATCATAGTAGTCAGGAAAAGATAGATGCTGGCATGCTGCCCATGTGATGCTAATCTGGATAAGCTGAATAATTCACTGTCCAAGATTGTGAGAATCGCACAAACAAGGTCCGAGAATAAGGTCAGGACGTGTACTCCTAGCTGGGGTACATTATCGTCTCATTCTCTATACCTTTCTTGTCGGCAATGAAGGAAATAGTACTCCACTATAATACAATATGGAATTATGGAGTATCTCTTTGGAAATGCAATGGCTTTGGTTGTGCAAATTCTAAGTTTGTTGGGGGGTTTTCAGTAAGAACATGGGATGCTCATTAGTTCTTCATGTAATTAAATCCTTTTCTTCGTCATGAGCTCTCCAGAAAATGAAGGGTTTTTTTTTTCCTGTTTACGCAAAGGCCCTTTAATTCTGTGTCATCCTTATCTTTTCTTTGCAGGTTTGTGGTAGGATCAACCAATGCTTCTTGGCAG

Coding Potentia
Explanation CPC Score
noncoding -1.27682
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0148700.1 2 4420767 C T
Osa02LNT0148700.1 2 4421075 T C
Osa02LNT0148700.1 2 4421435 A T
Osa02LNT0148700.1 2 4421829 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0148700.1 osa-miR5544 Translation 4.5 15.704 1 22
Osa02LNT0148700.1 osa-miR5815 Translation 3.5 13.554 1 24
Osa02LNT0148700.1 osa-miR5179 Cleavage 4.5 23.6 1 21
Osa02LNT0148700.1 osa-miR6246 Cleavage 5.0 16.458 1 23
Osa02LNT0148700.1 osa-miR399k Translation 5.0 13.569 1 21
Osa02LNT0148700.1 osa-miR1425-3p Cleavage 4.5 23.987 1 21
Osa02LNT0148700.1 osa-miR2122 Translation 4.5 19.519 1 22
Osa02LNT0148700.1 osa-miR2923 Cleavage 4.0 9.257 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0148700.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
Osa02LNT0148700.1 2 nan Physiological trait Eating quality RM3865 RM3294
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus