>Osa02LNT0148800.1

CATCTAAATTCGACCGAATATCTATAACTAAAGATAATAATCATCACATGGTTCAAACACTACCGCGAAAACAAAAGGCTAGTCAGCCATCTCTACATTGACAAAAACCACGGCAATCGAGACAAATAACAGTTGATTTCACCTAGGATTAGCAGAGCTGTGAGACTTCTGTTTCGCCTTCTCTATCAGGGGCTTCAACTGCTGCCTCTCCTCAAGAATCTTGAGGAAATTGAACAAGAATGGCACATAGTTGTGCTTCCTCCTGATGTTCTCTGTCTTCCACTTCTTCCACTTCTCTTCCTCCATTATGATCTTCTCTGTTACAGCCTCAATATGAGCAGCAACCTCCGCAAGAGAGTGCTCAACAGATGGCGCGTGCCTATTGGCGGAAGGATCACCCATCTGTGCCAGGAGGTTCTCCCTCTTCCTCTGAAGCTCCTTGAGTTCTAAAGTGAACTTCTCCCTCCGGTTCTTTAGGATAGCCATGACGCTGAACCTTATCTCATTCTGAGAGAACCGATCGATGCGTTCCTGAATGACAGGCTGCACCATCCTCAGCCAACCTATGTCGCCAACGCCACCTGGGCATTTCCCCAGGCTTATTGGCCCTTCCTTTAGCCCATCAAGCTCATACAGGACACCGTCCACAGGAACATAGCTAATGAAATGGTAGACATCATCATCCTTGACAGATGATTTCTGCTCCTCGGGGACTTCCGGCCTTGCAAATGAATTACTGGCCAAACGGATGCTCTCAGAATTGACTATAGCCAATCCTTTGAGATCTGGTGGCAAGTCCTTTGCAAACTCCTTTAGCTTTTTGAGCTCCTCACTAAGGGTGATACCCGGAGAGTTTAATAGAACAGAAACGATAGCTTGGGTGGCACATGCATTGTTAATTATCTGCTTAGCAAAGAAAAGGTTTGGGATTGGGTCCTTGATAGGACGCTCATCTTTTTCTGGAGGTTGCCATTTGTACAGCACAATGAGCCCATAAACTGGCTGAAGATCATTGAGGGCATCCAGATCGAGTGAATAGAGTTCATCAACTTGAAGACCCTTCAGTTGCATCTGTTGCAACAGTTCAGTAAAAATGCCTACAGAAGATATACAAAAGAAGGGTTATTGCCTACTTCATTGGGGAAAAAAAAAGCCAAGTGGCCAACATTTACAGGGGAAGCAAGGAATTTAACACTGAATAAGAAGGTGTAACATGGCAGATAGACCTAGCCTTTTCCAATTCCAATGAAATTTGAGTTATCTTCCATAACAGCTAATTGACTGCGCCTCCTGTTCAATGTGTCCCTTAGGACTACTGGACTAGAAATTACCAGAGAAAAGCTGTGAAACAGGCGTATCTGCCCACATCTCAATCCGCTATTACCATCGAACACTAAACAGTTAAACCGGCAGCTCAGAACACCAAGGTCCAACAGCAAGCTTGGTAATCTCATATGCTACTTAAACCATAGATGATGTTTCTTTAGGGTAGTCAGAAAAATGGCCCATAACTTCAGGAGGAGTTCTCTCCAATCTTGTGATGAGTAAAGTGGTACTACTTACTACTGGTAGTAGTTGTTTATTAAAACACAAAACAAATTCTAAACAACAAAACAATGTATAGAGTCGAGTCGCCGAAAATTCAGAATTTGAATGAAAGTCACAAATGGAAGGTAGCGAAACTCCTCCACGGATGCGCAGAGAAAGCCTAGTTGAATTGTTCATATACTACAATCCATCTCTTCTTTTGTATTTCTACTCCATAAAGGTAATTGAATTTTACCAGGATCATTCTCGATTGCAGCCCAAGACATGTCGAAGAAGAAACCCTGCGCACCCTCCTGCAGGTCAACGAGAGAAACCGACGGTCCGACCCGGCAGAAGCTCCTCCTCCTCCTCCTCCTTCACGAACCGCGCGCGTCGGGCCAGCGTCGACGGAGGTGGCGCGCGGCGCGGCGGAGGGAGCGAAGCGGATTCGGCGGCGGCGGCGCGTTGGTGGACTGCGTGCGTGGGTCGTCGGCGATGGGTGAGATTGGACTGGAG

Explanation	CPC Score
noncoding (weak)	-0.971858

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0148800.1	2	4456615	G	C
Osa02LNT0148800.1	2	4455142	G	T
Osa02LNT0148800.1	2	4455390	T	C
Osa02LNT0148800.1	2	4455865	G	A
Osa02LNT0148800.1	2	4456064	T	G
Osa02LNT0148800.1	2	4456487	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0148800.1	osa-miR5791	Cleavage	5.0	21.396	1	21
Osa02LNT0148800.1	osa-miR393a	Translation	4.0	16.269	1	21
Osa02LNT0148800.1	osa-miR159c	Translation	4.5	17.308	1	21
Osa02LNT0148800.1	osa-miR159d	Translation	4.5	17.308	1	21
Osa02LNT0148800.1	osa-miR159e	Translation	4.5	17.308	1	21
Osa02LNT0148800.1	osa-miR393b-5p	Translation	4.0	16.269	1	22
Osa02LNT0148800.1	osa-miR437	Translation	4.0	19.928	1	21
Osa02LNT0148800.1	osa-miR444d.3	Cleavage	3.0	13.754	1	21
Osa02LNT0148800.1	osa-miR1853-3p	Cleavage	5.0	9.459	1	22
Osa02LNT0148800.1	osa-miR1858a	Translation	4.0	5.035	1	21
Osa02LNT0148800.1	osa-miR1858b	Translation	4.0	5.035	1	21
Osa02LNT0148800.1	osa-miR2863a	Cleavage	4.5	22.677	1	21
Osa02LNT0148800.1	osa-miR2868	Cleavage	4.0	12.244	1	20
Osa02LNT0148800.1	osa-miR2868	Cleavage	5.0	14.399	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0148800.1	2	qWIJ-2	Morphological trait	Seed	RM233A	RM8
Osa02LNT0148800.1	2	nan	Physiological trait	Eating quality	RM3865	RM3294

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus