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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0148900.1

ACAATGTCATCTAGACCACCACTGAGACCCCTTTGCAGCCCAGTTGTCCGCATAAGATCGTCATTATAGTTTAGCTGATTGCTAACAGCTTGGTGATGAATCCTTCCATCTTGCATGGGAGAAACAATGCCCGTATTCCCACGATCCAGTGTCTGCCTTGGTACAGCCGGATTGTCTAAGCTAAGGTTGGGCAACGATGTGTTGATGCTGGAGTTACTAAATACATGGCTGTTATTTAGCATGTCTCTTGAGTTTGTGCTGCTTCCATAGTTGAATGGTGATGTGTCCTGATTGAATGCTATTGGAACATTGCTAGCTAGTGATGCTACTTGGCCCTGCATCTCATTTCCCAGCAGCGGAATCTGATTGGATGATGTGAAGCTTGAGACAGGTTCAATTTTGGGGCCATTCATATGCAGGGTGGCTTGCGACATGTTATCATTGTGACCACGATCCTGAATGTTGGATGGAACCGCAGTTTGCCAAGTATTGGTGGTTCTTCCAAGATCAGGAAACTGGGGAGACTCACCAACAAGTGTGCTAAATGGATCTGCAGAAGATGAATGCACCCGACTAAGGTGTTGCTGATTGCTCGACTCAAGAGGTTGCAGTGATCTGTTTGCAGTTGCCAGCGGTGCACCATTCGATATGTTTGGAAAGGAGTTACCAGAAGGACCAGTTAGAATTGTTGACATCTGTGCACCTCTGATCATGTTACCATTATTAAGCCCTCCTAAATCATTCAGTGAAGTGCTCAGATTATTTTGGGCATGTCCTAACTGAATTGGCTGTGAATGCAGCAAACCATGAACACCAAACGCAGAAGGGGAGTTCATCCTAGTAAGAATGTTGTTTGCCTGGGTATGGCCAGCAGTTGGGACTGTACGGTATCTACCATATGCGTTGTAGTTTCCAAATGAATTCATGTTTATGTAAGCAGGGTTCCTTCCTCCAAATGCAGCTGCAAGGTTAGCCTGCCTGCTTGCATCAGTGCTCAACCGTTTAAGGTACAGCCGATACTTCTGAAATGACAAGCAGAGAAGAAACATCAGTGAAGTATACTTGTAGGTGCAAACAAGAGGAAAAAAAATAGCTAAGAAATGAATAGGTTAGCAAAACTCTGAATTTAACACTGGTGAATTAGTACTTACGATTGCACAATCAATATACTAGGAAAATGGTATGAGAACATAAATGTTATATTTTGCTTCTCGTACAAATACTGAAAAAGAACTCAACAAAATACAGAACATGCAACAATATGAATTAGGAATATTTTAGGGCTGTATTATCATATATTAAAAAAAATCCTCTTTCAGATATCTGGGACAATAATAACAATAATTTGGTGCAGTGATAAACCATAGTAAACAACATGATGAAATGAACGGTCAAAGATAAGGAAAGAAATTCGACCTGCAAATGACTAGCAACATTCTCCCTGGTGATGTTCTCTACATTCATGAGATCCAATATTTTCTTTGGAACAGCCTTCTCGATGCCAAGCTGGTTAACAGCAGCCACAAACTTTCGGTGCAGCTCAACAGACCACACGACCCTTGGCTTCTTCTGTGTTGATGAGTCTCCATTCTCATTACTGTTCTCATCAGAATCATCACCATCATCTCCATTCTCATCTCTACTTTTCCGTGACTGCCTCTTGTTGCGGTTAGCACCAATACTCTCACCTTCATTGTTCATTCCCTGTGCCTTCTGACCAGCGTCATCATCGTTACCACGGTTCTTAGCATCACAATTCTTACGCCTAATCACATGTTGCCATATCGTCCTTAGCTGCTCAAGACGCACTGGCTTCAGAAGATAGTCACATGCACCATGGGTTATACCCTTCATGACAGTTTGTGTTTCCCC

Coding Potentia
Explanation CPC Score
noncoding -1.1297
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0148900.1 2 4575263 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0148900.1 osa-miR5796 Cleavage 5.0 21.561 1 21
Osa02LNT0148900.1 osa-miR169a Cleavage 5.0 13.193 1 21
Osa02LNT0148900.1 osa-miR171i-5p Translation 4.5 18.58 1 21
Osa02LNT0148900.1 osa-miR171i-3p Translation 5.0 18.445 1 21
Osa02LNT0148900.1 osa-miR1855 Translation 4.5 16.95 1 21
Osa02LNT0148900.1 osa-miR2863a Translation 4.5 21.687 1 21
Osa02LNT0148900.1 osa-miR2920 Cleavage 4.5 13.327 1 23
Osa02LNT0148900.1 osa-miR5146 Translation 4.0 17.813 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0148900.1 2 nan Physiological trait Eating quality RM3865 RM3294
Osa02LNT0148900.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus