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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0149300.1

GGGAAAAGATCGAGTAAAACAGTTTCAGAAGAATGGCAGTTCTATACTTCTATACAAGCTTTCTGAACCAATATACTTCTACATTTCATAGCTCTTCAGAAGCTAGCATACAAATAAGGAAAATAATATATAAAATTGTACATTAGGGGAAAAGGGTATGTTAGTGTGCATGCAAGCCTATGTTCAGATATAAGATTCATGGATGTGTCTGAACTCAGAAGAGGACTGAGTTGGCATGCGTCGCAACATGCAATATTGCAAATGAAGTATCACCACATTCAGTTACTGGAGTTGCGACGACTGAGGTAGAAGAACAATGCAGTACATGCGGCTGCTGCATAAGGGAACACGGTCCACATGCCCACAGCTGCCGCAACACTTGCGAGTGCAACAACAGGCCGTTCTCTCAGGAAAAACCCAACAGCTAGCTGGATAGGAAGAGTAAATAGACAACCACAGCAAACTCCAGCAAAATAACAGTCTGCTGGTATGCCCAATGCGCCAGCTAGAAATCCTGTAGGATTGCGAACCCCAACTGAAAATCGCTCAACAAATCCAATTAGGTTGCCATACTTTTGCACCGCACGCGATATGCTTAGTGCTTTCTCCTTCCCAATTCCAATCTTGCTGCTTATGTCTTCAGATGCTCTTGTTTGCCTAAAAAGTTTACCTAGATAGAATGGAACCATATCACTAATACAAACGCCCCAGTAAACCCATAACACTGTGGAAATTATATAAGATGCATTCATTGAGAATGAATTAGCAAGAGACTGCCAGGTTCCATCCAAACAAAGGCTGCGTGCTAAAGAAATCCCAACCCAAACATTTAAAGCTTCTTCACTAATAAATAGTCCAAATCCAGCAGCCATGAGCAACCAAAAGTAAACCCACCCTGGAGTATATTCCGGAACAATAACTTTCTTCCCAAACAGCGAAAAAGTATATCCGATGGTCGCTGCCGCATCCGGCGGCGCCGAAGCATCAACAATCTGTGGCAAACTGAAAGATGGACCTGAAGAAGGCTGCCTCATGAAGAGTGAAATCACAGTAGCAGTAGCTGCCACACCCAGAGCAAGTGCCACTTTAGCAAGGAAAGAAGCAGCAGTGCTGCTTGATTTCACTTCCATTGCATCGATTATCTCGCTCTCATCTTCCCCACCACCAGAAGAAGATTCAGCCCCGGAGGCCGATGCCCTTGCAGCGCAGGAATCCATACGGGAGAAATTACGCGAACTCGTAATGCGACCGCGAGCGGCGGAACGGCGTGCGCCGGCGGAGAAGGTGGCGCGGCGGCGGAGGCGAGGGAGAGGGAGCGGTGGCGGGGAGCCGAAGCGGCCGGCGACCGTCGCCATGGGAGGAGACGGCGGCGGCGACGGCCGGCGAGAGTGTCTCGGTGTCGCCGCCGTATGTTTGTGTGGCGCCAAGCGGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.672438
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0149300.1 2 4844551 G A
Osa02LNT0149300.1 2 4844729 C T
Osa02LNT0149300.1 2 4845563 T G
Osa02LNT0149300.1 2 4845842 G A
Osa02LNT0149300.1 2 4846988 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0149300.1 osa-miR6248 Cleavage 4.5 8.7 1 21
Osa02LNT0149300.1 osa-miR1428a-3p Translation 5.0 20.482 1 21
Osa02LNT0149300.1 osa-miR5149 Cleavage 5.0 13.515 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0149300.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
Osa02LNT0149300.1 2 nan Physiological trait Eating quality RM3865 RM3294
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus