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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0149600.1

AAAGAACAAGAACGAACAAATTAATTAATTACACAGTACATTTCCTGTCGGAAATACGTATACGATTGGGAGTTTTACAGTAATTAATTAAGGTCGGATTAATAATACAAATCCAGCTTCTGCATCACTCCCTCACCCTTGGGAACATGCACCTGTACACCTGCAATTCACAAAGCATGCAATTTTTTTTAAAAAAAAATGAACTCGAAGAAGCAAATGAATTACAGAATTAAATAATTAATTAACTAAAGTTGCAAATGAATTATTAAATTAGATAATAATCAATCAACTAACTAAAGTTACGTGCCTTTGATAAGAAGGACCTCTTCTCGGCTTTTCTCCGAGGATGCCGCGCCGGCGCCGCCTGCGCCGGCGACATGCGCGGCGTGACGTCCGGCCCGGCGGCGGCGGCGGCCTTCGCAACCTCCCGGTGCCGCTTCACCTTCTCGAACTGCACCGTGAAGCCCTGCCCCGCCGCCGCCGCGTTCTGCTCGTCCCACACGCCGAACTTGGGCACGGCCGATGCCGCCTTCGCGGCGCGGCTCACCTGCGGCAGCGCGTGGCGCGGCGGCGACGCGGCCACCCTCGGCTGCGCGGCGTGCTGCTGCTGCTGGTGGTGGTGATGCATCTGCGGCGGCGCCGCGTACGCGCCGGCGCCGGGGCCGCCGTACCCGTAGCCGCCGCCGCCGCCACCGCTGTTGCTGTTGCTGCTGTACCGCGGCTGGTACGGCTTGGGCGGCGAGAACTTGCTGCCGCGGCTGCTGGCCTCGGACGCCGCGCTGCTGCCGTTGCTGCCGCTCCTCCGGTGGTAGCCATTGCCGCTACGCTGCGACGCCGGGTAGTGGTGGTGATGCTGCTGCTGCTGCGGCGGCGGCGGCGCCCGGTGGTGGTGGTGGTGGTGCGCCGGCGGCGGCGCGTGGCCGTGCCCGTGGCCGTGCGAGCTCGGCGGGCGCGACGCCGCTTTCCTGCTCAGGTTCTCGTAGTGCTCGTAGGGATCGAACTCGTAGTCGTCGTCGTGCGTCGCCGGCGCCGCCGTCGCCGGCGTGGGCGCGGTCTTGTTCTCGCGCACCTTGTCGAAGAAGACGGTGTAGCCGATGTTCTCGGCGTCCCACGATCCGAATTTGGGCACCACGGGGCCTTGTCCAGCCATGAAGTACTATGCTGCCTGCTGAAGAAGAAGAAGAACCGATCAGGTGAAGATGAAGGCCTCTCCTTCTTGGGCTGATTGCTCTTCTCCTCTTTCTCTCTCCCTTTCCTCTTTCTCAAGAGGAAAGGAGAGAAGAGAAGAGAGAGAAAGCAGAAGCAGGCAGGAATGATGGCAGGACAGGACAGAGAAACCAGGGATGGTTTTATGATTGGGGTTCAGAACTGACAGCCTCCCTAAATTCCTAATTAAAGGAGATCACCCAGCTGTGTGACTCTGTGCAAGCAAAACTCAACAGGGTGGCAGCTGGAAGAGAGAATGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.166445
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0149600.1 2 4951093 C G
Osa02LNT0149600.1 2 4951162 C G
Osa02LNT0149600.1 2 4951675 T C
Osa02LNT0149600.1 2 4951763 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0149600.1 osa-miR166l-5p Cleavage 4.0 9.047 1 21
Osa02LNT0149600.1 osa-miR5496 Cleavage 4.5 18.971 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0149600.1 2 nan Physiological trait Eating quality RM3865 RM3294
Osa02LNT0149600.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus