\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0149800.1

ACAAAAAGAAAAATTCTTTTTGGCGGAATAGATACAAACAACCGCAACCATATCACAATTCACAAGTGGCTCTTCTAAATGTTGAACCAGCTTATGTTCAGGAAACTAGACAAATGCAGCAAATCAAATCCTTTCAGGTGTCCAGAATAAAAATCAATGGCTACCACCGAAAATCACATTGCTTTGCTGGGTATTACTAATTTAAACTCACCAAATCATTCTAACTGTACATTCCACTTTGTCGCTCGAAGTATGGAGTTTTAGGCCTCCACTTTCCTGTGAAAGATGATGTTCAGTGCATCGCTGTATAGAGCCACAGAATTTGAGAGCACCGCAAGCACAATCATGGTTAAGGCCAAAATCTTGTCGCGCTTGGTTGCAATTCCATAAGGATCTCTGAGTATGATCATGGCAGGAAAGATAAAACCGATAAGAACAGCAGCTGTGGCACCGGTGAATTGGAACGCGTCCCAGATGCTCGGTATGAAGATGGCAGCAAGATAAATTACAGCAAGGAGTGATCCCGTGATAATGGCGAACCTTCTGTTGTCACGAGAAATGTGCCTTGCAGTAGGGAAGAGCAGTCCATCCAAATTGAGCCTAAGGGCGAAGAAGACTATGGGAAAGACGAGCATGATGTGGACTACATAGCTCACTCTCACAACATCATTGAAGACAGAGCTGAATGGAATATGAAGGTTGGAGTCAAAGTTGGCGAGTACATCAGCCAGGGTACCCTCGCCAAAGAGGAGATATGCAAAGAAGCTTGTCGCAATGTACACACTTGAGCAGAGAGCCAGTGAAGTTTGCACAATTGGCTTGGTTTGAGTTCTATCTTCCAACTCATTGTCGATGCTATGTACATTGTAGTGGCAAATGTAGGCAGTGACAACAACAGGCACAGCTGTAAAGAGTTCCCAGATGGAATTAGTTCCATCTAACTCGGGAAAGAGTTTGGGAATCTCCACAGTTCCTTCAATGAGTCTGACAATCGCAATTCCAGCAGTGATGACAACAAAAACCACAGCAAGAGCAACTGACAGTGCAGATGTGTATCTCAATGAATCCAAACGCTTAAAGCTCACCAATGGACCAAACACAAAAAGAGTCGTAGCAAGGAGAACAACCGGACGAGAATTCCACAAATGAGGTCCAAACCACCCCTCGAAGATGCCACGGTGATGAACACCACTTGTTGATGTTCCGGACAGCACATCACCAACGATAATCATGTAAACGATCATCATGCCAATGTTGTTTATTACAACAGATGCTTGCAGCGCGATCCTCCCCCACTGACCGAAAGTTTCACCCATCAGCCACCCGTAGGACGTAATCTTGCCCTCGTGGCTGCACCTGACCAGCATGTCAATGGATGCCTCAGTGAGCAACGCCACAAGGATGATCATCAGGATACCAGGGATAATTCCCAGCATCTTGATGCTCGCTGGCAGTGCCATAATTCCAGCCCCCACGATGGTCGTTGACAGATTGAACACTGCACCGGAGAAAGAAGCTCCATTGAACTCATGGATCCCCTCCTCCTCTTCCTTAATTGGGAGAAGCGGTGTGGTCTCATCTCGTATTTCCTTGTGTGACACATGCCTGCTGTCACTTGGTGATCCATTCCCAATTCCCATTTGTGTTCGCTATCCCCAAACCCCAATCCTTGCTCAATACCGGCGATCAGATAAGATCAAAAGAGAATATCACACCTACAGAAGCTCTCTCTTCCTCCCCCAAACTCCTCTCTTTTTTTATAGGCGAACCAACGCCGGGTGGATCAGCAGAGCAAAAGCCTCTCTCTTCTCTTTCACACCAAACCAACAACTGGAGGAGTTCTTGCCTTCCGGGTCGCCGCGGCTGGGGGTCGCTTTCCGCCCAAAGAAAGAGAGAGAAAAGGCCAAACTTTCCAATCCAGATTGCGTCCTCCCGCCGCCTTCCTCCCCCTTGGCTCGCCAATCAAAATCGATCTTTTCCTTTGCCTCTCCTCCTCCTGCTTGTGCTCGATTAAATTAAAGTAAATAAAAGGAAAAGAAATTCCCCGGCGGGCGGCTGATTGCTTCCTTCCGGCCTCGCCTTTCTTTCTTGGTTTGGTCCCTTATCCACAGCAACAAGATGACAAGTTAAAAGAACGGCGATGCGTGTGCGCGGCGACTGGCGGGTGGCGGCGACGGCCACGCGACGACGGCGACGGCGGATTGCGGCGAGAGGGATGGATCTGCCGCTACTCGACAATAGCACAAGTGTGTGTTTGCGGGACTATGAGAGGTGTTTTTTTATCATCGTCTTTGTTGGCAAATCCGTTTTATCCTCTTTTTTTTTTCTTTTTGGGGGCAAATCGTCTTGTTGTCTTGCCATATGTCACACGTGTGCATACTTTATCCTCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.476133
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0149800.1 2 5060521 C T
Osa02LNT0149800.1 2 5061280 T C
Osa02LNT0149800.1 2 5061340 T C
Osa02LNT0149800.1 2 5061773 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0149800.1 osa-miR1850.3 Cleavage 4.5 16.018 1 22
Osa02LNT0149800.1 osa-miR1320-3p Cleavage 5.0 20.812 1 21
Osa02LNT0149800.1 osa-miR2093-3p Cleavage 5.0 24.808 1 20
Osa02LNT0149800.1 osa-miR2104 Cleavage 4.0 13.158 1 22
Osa02LNT0149800.1 osa-miR5490 Cleavage 4.0 11.572 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0149800.1 2 qWIJ-2 Morphological trait Seed RM233A RM8
Osa02LNT0149800.1 2 nan Physiological trait Eating quality RM3865 RM3294
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus