>Osa01LNT0012100.1

ATAAAACATAAGTATGCGTAAATAATGTATTCCCTTGCAATGCTACTATCCCAACAAACTGAAAAAAAAAACACACACATACTCCACGTAGAAGATGATCTGAAGAACTAGGAACAGAGTACAGACTGGCAGTGTGAAACTGTGAATAATCAGGCAGCGGGTGGCTTGGGCTTCTTGTTCGGTTTGAGGATGAGATCGGCTAGAGGATACCAAATTATTGGTCGCTTGTAGGCTTGTGCGCCGGCAGCGAAGAAGAGGAGCAGGGCGCATTCCCACATCACGGCCTGGTACACCCTCGGCAAGGGGAGGAGGCTCATCACCACGAGCAGCACGCCGCACGAGAGCGAGAAGCCCATCCCCACCGCCGCCGTCTGGAAGTCCGACGATCTCATCGCCGCGCGCGAGGCCGCCGACGCCAGATCCCCCCCTCCGCCCGACGCCGAGAGAATTCCTTTTTTTTTTTTTGCTGATCGATCGATTCCGCCGCCGCCGTCGTCCGTCCCTATCAACTTTCTCTTTCAATCTGTTGTGTTTAGGTTATCTGATTGGGGTTGGGGTATATATGAACCGGAAAAATATATATACTCATGTAATCCGTGTCCTAAAACATCTCCG

Explanation	CPC Score
noncoding (weak)	-0.895105

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0012100.1	1	8968790	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0012100.1	osa-miR416	Translation	4.5	16.084	1	21
Osa01LNT0012100.1	osa-miR1429-3p	Cleavage	5.0	9.372	1	21
Osa01LNT0012100.1	osa-miR2096-5p	Translation	5.0	20.638	1	21
Osa01LNT0012100.1	osa-miR5488	Cleavage	4.0	23.222	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0012100.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0012100.1	1	An9	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0012100.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0012100.1	1	nan	Morphological trait	Root	RM7383	RM23
Osa01LNT0012100.1	1	nan	Resistance or Tolerance	Insect resistance	RM576	RM3412
Osa01LNT0012100.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0012100.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0012100.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus