>Osa02LNT0150400.1

CACTGTAAGGCTAAGTTTATTTCAATTGGATCATATGCGTCAGAAAATCCCAAGGAAGGATACAACTTGAGGAAAATTTGATGGTGCTTAAAACAACACTTGTATACGATGCTCATCTCGATCGATCGGCTTGACTGCCTACAATCAATACCTGTTGTTAAGCTTATCAGCGTTCCTAAAACAAACAAACAAACATACAAACACCAACTCCACAGGCAGTAAACTTTCTATCCAAAGTTGAACTGAAAGCCTCCAGGAAAGCCGCCCCCGGGGAATCCTCCTCCTCCATGGAATCCACCATCGTAATGGAATGTGTATTGCTGGCCACCTCCCCCAAAAGGATTGAAACCACCACCTCCTCCTCCTCCCATATTCATCTCATCAAGATCCTCTCCTCGGTCGTATCTTACACGTTTATCTTCGTCCCCAAGAACCTCATAAGCTGCAGCAATTTCTCGAAACATGTTTTCTGCTTCTTCTCGCTTATCTACATTTTTATCTGGATGCCACTGCAGTGCCAACTTCTTGTAGGCACGCTTAATCTCTGCAGCTGATGCCGTCTTTGAAATGCCAAGGATCTTATACCAATCTTTTCTTTTGCTTAACTTAAGCTGCTTTTCAGCTCTCATTAGTGCTTCTCGGATTCCCATGTCCTGGGGAGATTTCTGGGCAGCCTCTTTTAGATCCTGAACCGCTCCTTCCCAGTCTTCTGTAAGAAGCTTAGCTTCACCTCTCTGTGTTAATGCATCAACAAGTTCTCCATCTATGTTGAGTGCTTCTGTACAGCTACTTATAGCCTCCTTGCCTCTTCCGAGTTTAACCAGAACCTTACATAGCCCAAGATAAAGATGTACATTGTAAGAAGTATGATCTGGATCCATTGCTAGGGATGCCTTGTAGTCCTCAGCAGACACACGTAGCTTACCCTTGGCAGCATTATCTTCAGCACTCTTAGTCTTCTTCACAAGATTTTTCAACCCAAAATATGCTTTCTTCAGTTCTGAATGTTCAGGGTCTAGACGAAGGCCTTTCTGGTAGTGCCTGGATGCAACATCATGATCAGCAAGGTAGTAATATGCTCGGCCACGAAGCAACAAGGCATCCAGGTTATCTTCATCTTCCTTCAGAATAAATCCTGTTTCTGAGATAACAGTTGAGTAGTCTTTAAGTGCTAGCAATGCTTTAGCCTTGAGAAGCTTCGCCTTTAAGCAGTCTGGAGAAAAAACAAGCACAATTTTGTTGATGTAATCCAGGACTTTTGAGAAGTCATGAGACTCAAACTGGCCATAAGCAGACTCTAATGCATTTTGAGCCTGAAGCAGTTGAGATAATTCCTTTTCCACTGAAGAACTCCCAGGTTTTAGCTCCAGGTATTTGCTATAGTCACCCTCCGCTTCCTTGTACCTGCACTTGTGACGAAGCACAGATGCACGCTGCCTGTAAGCTTCTGAGTGATTTGGTTCAACCTCCAGCACAGCATTTAGCAGACCAAGTGATCCATCATATTTCCTTAGGTTCATCATTTCTAAGGCTCGTTTGAACAAAGTAGAGGGATCATTATCTTGGCCTTCTTGAGCGAAGACGAAGAAGACGGGGGAGGAGTGAAGGAGAAGCAGCGGCAGCAGCACCCTCCACGGCCACCGCGCCATCGCCACCATGCTCTCTTAGTTCTGCCGGCGAGCGACGATGCGGTGGAAGCAGGAGGACGCCGGGCGCCACCTCTGCTCGCGGCGGAAGCGGCGGGCGAGGAGGCGAAATCCGAGGCCGAGGCCGAGGCCGGATGGGATGGATTAGGATGCTCACCGGTGAGCGAATGCGGCGGGAGCAGGAGGACGCCGGCGCCACCTCAGCTGGCAGGATGGAGATCGGCGGCGGCCGGCGGGCGAGGAGACGGCCGGGACGGATTGGGGAGGC

Explanation	CPC Score
noncoding (weak)	-0.169836

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0150400.1	2	5332102	T	A
Osa02LNT0150400.1	2	5332879	T	C
Osa02LNT0150400.1	2	5333306	C	T
Osa02LNT0150400.1	2	5333608	A	G
Osa02LNT0150400.1	2	5333992	A	T
Osa02LNT0150400.1	2	5334186	T	A
Osa02LNT0150400.1	2	5334241	T	C
Osa02LNT0150400.1	2	5334812	T	A
Osa02LNT0150400.1	2	5336869	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0150400.1	osa-miR5796	Cleavage	5.0	14.356	1	21
Osa02LNT0150400.1	osa-miR164a	Cleavage	4.0	13.171	1	21
Osa02LNT0150400.1	osa-miR164b	Cleavage	4.0	13.171	1	21
Osa02LNT0150400.1	osa-miR319a-3p	Translation	4.5	19.394	1	21
Osa02LNT0150400.1	osa-miR164c	Cleavage	4.0	13.171	1	21
Osa02LNT0150400.1	osa-miR164d	Cleavage	4.0	13.171	1	21
Osa02LNT0150400.1	osa-miR164e	Cleavage	4.0	13.171	1	21
Osa02LNT0150400.1	osa-miR171d-5p	Cleavage	5.0	17.562	1	21
Osa02LNT0150400.1	osa-miR164f	Cleavage	4.0	13.171	1	21
Osa02LNT0150400.1	osa-miR2118f	Translation	4.0	24.258	1	22
Osa02LNT0150400.1	osa-miR2118g	Translation	3.5	24.258	1	22
Osa02LNT0150400.1	osa-miR2118i	Translation	4.0	24.258	1	22
Osa02LNT0150400.1	osa-miR2118j	Translation	4.0	24.258	1	22
Osa02LNT0150400.1	osa-miR2118l	Translation	3.5	24.258	1	22
Osa02LNT0150400.1	osa-miR2118m	Translation	4.0	24.258	1	22
Osa02LNT0150400.1	osa-miR1863b.2	Translation	5.0	16.413	1	23
Osa02LNT0150400.1	osa-miR5506	Translation	3.0	16.345	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0150400.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0150400.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0150400.1	2	qWIJ-2	Morphological trait	Seed	RM233A	RM8

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus