>Osa02LNT0150500.1

ACATTACAATACAAATGGTGACATTGATACAAATCCAAAATTTTGTCCTACGACAACGACAAAACTTGTTTAAATTATCCCAGGGAACTTCACCCAACCATAAGTCATGAGTAATTACCTGGTGGGATCATTTTCTCCTCAGTTTCAAGAACATCTACATGAGAAGAGGGAGGATTGAAAAAAATGTACAAATATGTTACAATAAGGGAATTGGGACAGACAAAATTTGCTTTGCAAAAGGCTTTCACATATTGATACCGCAAAGAAATGGAAGTAATGGTACTATCTCCTAACAGCAGCTAATCAAATGAAGGATCACGCCGACAAACACAATGATACTCTGGTTAATTTCTGTAGCCAACCCCAAAATGAAATCGCCTTGCTTGTTTATCATTGAAAGCATACTCAAGACGCAAAGGTCCCAGTGGGGAGTCCACACGGACGCCAACACCGTAACCGTAACCACTTCCTGGCTTCCCACGAGCTCCGGCTGGGTCACCAGGAACTTTGGGACCAGAACTAAGATCACTACCATAGTCACCAAACACCACACCTTCCAATGGCCCAAACATGCGGCAAGAGACTTCTCCACTACCAACAGCATATGAGCGGCCAGAACCAACAGCACCTTCTTCATATCCTCTTACACTATTTGTCCCACCAATTGCAAATGCTTCATGAGGCGAAAAGTTTCCCTCTACATGACCTCCAGAAGCACTTAGAAGAAGTCGAGCAGGGCCAATTTCATAGCCCTGCCTCAAACGCGCTGTCACTCTGTTAAAACTGAGCCACTCAGGAAGAATAGGAAGACCTTGCTCAATGTTGAAAACGAACATTGTTGAGCTACGATCTCCAGAGTCTGTGTAGACACTTTCAAGCTTAGCTAGTAGTGTATCATCATAAGCATTTCCGCTGGCAGTTAATTGGCTGTTATAGAAATCTCTGATGATAGGATTGCCTTTGTCATCACGAGCACCAGCATGCTGAAATATTAATCCAAGTGTGCCACTCCATTTAGGTCTGAATGGTCGACTGTATTCAATGCCAGCAGTAACTCGTCCAATTGTAATGGGCCCATGGTCAGGATGGTCCCCACCATGGATAAGTGTTCCGGGAGTCCTAGAGTTCTGAACCATGATAGTTCTGGAGGTCCTCTTATTGTCACCATCAATCCAAGGATCAGTATAGTTTAATCGAAATATAGAATCTATTTGCCCCCTCTCCAGTGAGAGATTCAGCTTCTTGTTCCTCCCAAAAACATTTCGATGAGAATATGCAAAACTGCCAATAAGCCCAGAAAGTGGTCCATTTGTTATCCCACTTGAAATGCCACCACCAGCAGAAAAACCACCCGAAGGTCGTTCAACAAGATTCATGACAAGATCAACTTTATTAGAATCTCCAACTGGCTGTGGAATTATAGTAACATCCTCCATGATTCCCATAGTAAGGATTGTTTCAACATCCCTTTTCACTTGTGCTCTATTGTAAGCCTGACCCTTCTTGGTGGTAAGGTGACGGAGTATTGTCTCTGGTTGCGTCTTCCCAACAGTTGGTTCACCAGTTCTTCTATCCAGAAAGCGAATATTGATATTATTAACCTCAGCTTCAGAAACTTGTAGCCTCAGAATTCCTCCAGAAAGAATCTCAGCATATGAAACCAAGCCAGTTAGACCACGTTCCTGATACCATCCATTAACAGACTTGATCACTTGATCCAAATGTCTTATATTGATTATTTTCCCATGGCGATCATGAAATGCGTCCTCTAGGAACTTAGATGGCAGCATGTTGGCACCCTCACAGACCAACCCATGGAAGTCCTGGTTCGGCTCCACCTCAAAGACGAGACGAATGCCGTCACGGGTGTCGACGGCGACGGGCATGCAGGAGCGGAAGAGGCCGCTCTCGACGACGCGGTGCACGTCCTCCTGCACCTCCCGCACCGTGAGCGCCGCGTTGGGGCGGCACGCCCGGAGCGCCGCCGCCGCGGCCGCCTCCAGCTCGGGCCGCTCCAGGGGCTCCCCGTCCTTCCCCCTCACCGCCACCTCGCTGATCAGCACCCGCTCCTCTCCCCCTCCACCCCCTCCGCCGTCCTTCTGCCTCCGCGGCAGCGCGATGGGCGCCGCCGCCGCCCCCGCCCCCGTCTCGGCCCTCGCCACGGGTAGCCTGGGCAGCGACCTGGCCACGTGGCGCACCACGCCATCGATGGCGCGGCCGATGCGCGCGAACGGGAGCGCCGCGGAGAGCAGCGTCGGCGCTGGCGCTGGCGCCGGAGCCGCGTCGGCGCAGGGGAGCTTCACACCGGAGGAGACGAAGCGCACGTCTCGGCGCGTCCCCATGGCGGCGGCGGCGGCGCTGGAATCGAGCTAGGGTTTAGGGTTTCCGCGGCGACGAGGAGAGGGTTTCCCCCGCCATGGGCGATGCGGAGGAGGAGGAGGCGGCGGCGGAAGAGGGAGAAGGGAATGGTGGTGACG

Explanation	CPC Score
noncoding (weak)	-0.899765

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0150500.1	2	5375349	T	C
Osa02LNT0150500.1	2	5375487	C	T
Osa02LNT0150500.1	2	5375991	T	C
Osa02LNT0150500.1	2	5376171	T	C
Osa02LNT0150500.1	2	5376708	C	T
Osa02LNT0150500.1	2	5377840	A	G
Osa02LNT0150500.1	2	5375077	A	G
Osa02LNT0150500.1	2	5378965	A	G
Osa02LNT0150500.1	2	5379126	A	G
Osa02LNT0150500.1	2	5379173	A	C
Osa02LNT0150500.1	2	5374643	A	T
Osa02LNT0150500.1	2	5380026	T	C
Osa02LNT0150500.1	2	5380064	A	C
Osa02LNT0150500.1	2	5374317	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0150500.1	osa-miR5792	Translation	5.0	20.128	1	24
Osa02LNT0150500.1	osa-miR5836	Translation	5.0	23.706	1	21
Osa02LNT0150500.1	osa-miR166c-5p	Cleavage	5.0	13.338	1	20
Osa02LNT0150500.1	osa-miR1438	Cleavage	4.5	18.237	1	22
Osa02LNT0150500.1	osa-miR2876-5p	Translation	5.0	14.698	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0150500.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0150500.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0150500.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0150500.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus