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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0150700.1

CAAACAGAATGAAAATTTCACCAAGATTTTGCCGGAGGATATTGTTCACCACACAAAACTTATTACAAGGAGTTTTGAGTTTTCAAAGACCTCAAATCCCAGGGAATAGGGTAAGCTTTGGCATAGAACATAAGTACCGAGTCTACAACTACAGATGGAAGAAAATGAACTTTTCACACACAAAGATGCTCTATAAGAGGAGGTTTGAGAATGCACACTGGCACTGGCGTCTGACTAGCTTTTGCTATCTTCATTCTGTTAACTCTTTCAAGGGGAATGTGATGTCAAACTAGCTGGAAGAAACACATCTGAATTTCATGGTTCCAAGCATATCGAGTAACATCGCCTGTTTGTTTTAAAGATCGTATCCAGTAGATGGACAATGACAACCTCTCCACTGACAACGGCAAGAATCAAAGGACTTTCGGTGGTGAAGAAAACCCCAGCCTACTCAGCAACCAATAGAAGAGTATGGTCCATCCCAGCAGCAACCTGTGAAACCTCTGCTCCTTCCAGGGTATCGATGAGGAAAGGCTCAGGCTCATCCATCGAGCTTCCCAAACCTAGCCTGCCGTTTCGGCCAGATCCCCATGCCCAAACCTCTCCCTTTGATGTGAGAGCAACCGAATGAACTCGACCAGCCGAGGCCGACACTGGCCTCTCTCCATTCAGACCGTCGACTAGTGCAGGCACGTCTTCTTTGCCAGGTCGTCCAAGCTGGGAGCTGCAGTTCCATCCCCATGAGAGGACGCCGGTCTCGGCATGGTCATCGCCTTCAGTTGATATGATGCATGTTGCAAGAGAGTGGCCAACACTTGCTGACACAGAGAATGGACTGTGGCTAATGTCGACAGGAAGAAATTTGGACCATGCTGATTTCCTGCCAAGCTGTCCGTAAGTGTTGTCTCCACCGCTCAGTACGATGCCATCAGAGCAGAGAACCAGAGAATGATCGAGCCCACATGACACATCAGACACCTCAACATGACACACTTCATGAACAAGCGAAGGTTCCCAGATGATGGGCATATTGTCTTCACTCCTTATTTTTTCCTCAACCATCTTTTCAACGGCCTCTAGCATTGAGCTAGAGTACTTGTCAACTGTTTTTCCAAGTAATTCTTTGGCAGAAGAAGCCTGAGTAATATGGCCAATTTCTCCTAACCTTCCGTTTTCTGAATATCCCCAGCCAAGTAACCCTCCATCCTTTGTCAATGCCATAGCATGTCCCCAACCAAATGATACCTTGACAATATCATAATTAGCAAGTGCTTCCACTCTAGAAGGTACTGCAGCCTCTACAATGTCCTTTCCAAGCCCAAGTTGGCCACGCTTTGATCTCCCCCAAACCCATAAAGAGCCATCACACCCAATTGCTGCTGAAACAACCCCACAAGCAGATACAGCTCGGACTTGAACATTTTCCAATCCTCTCACTTTTTCAGGCTTGCTCCAAGTATTCCTCGGGGCGTGGTGCCCGCGGCCGAGCTGACCTTCATCGTTGCGGCCCCACGCCCAGACCTCCCCTTCGGCGGAAACCGCGAGGGAGTGGTAGTGCCCGGCGGCGACGGCGGCGACGGACGTCGGGAGGGAGGGCACGGGCGTGGGGACGTAGACGTCGGCGGCCGGCGCCGGCTGCCCCGCCGCGCCGTGGCTGTTGTCCCCGAAGGCGTACACGGCCCCGACGCGCGGGAGTGGCGCGCCGTTCCCGGCGAGCTCGGAGAGGAGGCGGCGGCGGAGGAAGCCGGAGGCGGAGGCGGCCGTGCGGCGGAGAGGACGCATTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.904461
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0150700.1 2 5465646 T C
Osa02LNT0150700.1 2 5465734 T C
Osa02LNT0150700.1 2 5466003 T C
Osa02LNT0150700.1 2 5466084 T A
Osa02LNT0150700.1 2 5466253 T C
Osa02LNT0150700.1 2 5466443 T G
Osa02LNT0150700.1 2 5467745 T G
Osa02LNT0150700.1 2 5468062 T G
Osa02LNT0150700.1 2 5465184 T G
Osa02LNT0150700.1 2 5465344 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0150700.1 osa-miR6255 Cleavage 5.0 9.298 1 22
Osa02LNT0150700.1 osa-miR395f Cleavage 5.0 20.131 1 21
Osa02LNT0150700.1 osa-miR398a Cleavage 4.5 13.877 1 21
Osa02LNT0150700.1 osa-miR398b Cleavage 4.5 13.877 1 21
Osa02LNT0150700.1 osa-miR399e Cleavage 4.5 17.92 1 21
Osa02LNT0150700.1 osa-miR399f Cleavage 4.5 17.92 1 21
Osa02LNT0150700.1 osa-miR399g Cleavage 4.5 17.92 1 21
Osa02LNT0150700.1 osa-miR399h Cleavage 4.0 17.92 1 21
Osa02LNT0150700.1 osa-miR2092-5p Translation 3.5 21.704 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0150700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0150700.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0150700.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0150700.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus