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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0150800.1

AACACCAACAAGATTTGGCTATTACATAACCAAATATCGGTAGAAAAGTTCATCGTCAAAACACACACATAAACTATTTTTGGTCTTGCTCAGGTTAGCATTACACAAATTTGTTTAGTTTTGTTACGGAACAAAACAAACACACCCTTAAGCCTCAAACCAACAAATGTCATTCTTTCCATCTAATATAACTGAAGATATGCCAAAATTTCGACAAAGGCCATCATTTCAAGGTGAAAGAACAGGCTTCCAAGATTGTTATCTGGTGCCAATCTTCATAGAGTGACTGTATTTAGTACTTTACTTGTCAAGCTTCATGCATTATGCGTTTGGTATCTGGAAGCTCAATCCCAGGGCTCCAAGCAGCATTTCTTCTATGAGGTTTCATGGTACGTCAAAATGAACTCACATAAAGACTGACTGCCAGCGTCATTTCCTTCTCTGAGGATCCCGAGTAAGGCCGTGCTTTTTCAAAGTTGTGATATAGCTTCGCATCAGACCAAACTTGTTAGAACCTAGGTGGTGCAAGTAATCCCATGTAAAGATCCCTGTCTTGTGCAGATCATCAAACAATATCCTGCAATACAAATACTAGGTCATATTATAGACATACTGTATTCTTGCGGAAAATCAAACAAGAAGTGCATATAAAAAGCCACAAAGAATTGCTTACTATTTTTTTTTACGAAACAGGATCAATTGACATTATGTGGGGGAAAACCTCCACGAATTTGATAATGCAAGAAACATGACCCTCACCGTACTCCGTAATTTCCTACTGATTCAGCTGACATTATTCCAACATGTCGCCGCCCAAATATAACCTGATCAAAGAAATGCAGATTGGCATAATTTCCACCGTAAAAACTTAGTAGACCGAAATTTTCTAGGGCACCGAAGCGATGCCAATATTAAAGATACAGAGTTAAGGTCTCTGTCCGGCTGCTCAGCTTTCCAAGGCTAATAATCTACAAACGTTCAAATTTATTCATAATAGAAAGTGTAGCCCTTTAGAAACTATAAAATGCACGACAGCTCCACTGTGAATGGATATAACGAGTGAATGGGCTGATCTGATACAACAAGTGAATGAGTAAAAATGCACCACATTGGCCATCCAACAAGCTCAGAAGACCATGTGTGCCACTGAGTACAGAAAGTGCATGGTGCATTACCTTCTCACCAGCTACTGATCTGATTTTGCTATCAGCTGCTGGGCTGTACACTCTAAGAAACTCAGCAGGCAGATGGAATGAGCTGCCATCCTCAAATTCAACTTCTACGAATTTGGGCGCGCGAAGCGCGAGCTTCGTCAGCCGCGGGGGCTGCGCCTGCGCCTGCGCCGCGTGGAGCCGCCGGACCACCGCCGCGCCCATCGCTGCAGCCATGGACGGCCAGCCGGTGAAGCGGCCGGACCTAGCGGGAGGAGGGGCGATGTCGCGAGGGGCGGAGGAAGGTAGGGAGAGGGGCGGCGACGCGGCCGCGGCGTCGATGCGGCTACGGTGGCCGGCGGGCAGCGGATGCGGCGGCGAGGCGAGGCGAGGCGAGGCGAGGGGCGGCCGGAGATTCGGGAGGGAGAGGGGTAGCGATGGTGACGTGGCGAGAGAATAATT

Coding Potentia
Explanation CPC Score
noncoding -1.27616
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0150800.1 2 5479397 T G
Osa02LNT0150800.1 2 5479618 A C
Osa02LNT0150800.1 2 5479807 A G
Osa02LNT0150800.1 2 5478767 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0150800.1 osa-miR818f Translation 5.0 16.375 1 21
Osa02LNT0150800.1 osa-miR156a Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156b-5p Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156c-5p Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156d Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156e Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156f-5p Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156g-5p Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156h-5p Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156i Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR156j-5p Translation 4.5 5.926 1 20
Osa02LNT0150800.1 osa-miR171e-5p Cleavage 5.0 18.571 1 21
Osa02LNT0150800.1 osa-miR426 Cleavage 3.5 19.061 1 21
Osa02LNT0150800.1 osa-miR2091-3p Translation 5.0 16.726 1 22
Osa02LNT0150800.1 osa-miR2868 Translation 4.0 11.251 1 20
Osa02LNT0150800.1 osa-miR2872 Translation 5.0 21.306 1 21
Osa02LNT0150800.1 osa-miR2924 Translation 5.0 24.268 1 21
Osa02LNT0150800.1 osa-miR5508 Cleavage 4.0 15.265 1 21
Osa02LNT0150800.1 osa-miR5514 Cleavage 4.5 15.363 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0150800.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0150800.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0150800.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0150800.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus