>Osa02LNT0150900.1

GCCGTTACAACTAGTGTTCTCCTTTCCAAAAAATAACTATAGACAAAAAAGAATTAAGGCATCGGGACCTGTATATATCATCTGCACACCAAGGAATAAACCAAACCAAAGACCAAACTTTCAGCAACTGTATAATACGCTGCATTGCCAGAAGAGATAATCTAAGAGAGTTCGCAGCTCCTCCCCACACATCAACAGAGGATAGATCGGGCATCGACCACCGACTGCGGTGGATCGAGGTCCCTGTCCTGCAGGGAGTTGCCTAGATGCTTTTGCATTTCTGATGCAAAGACATCGTCCAGGATCCCTAATGCATAATCAGATCCTCTGTACCAAATCCTGTTCTCTTTTCTGCTCTCAAGAAACCTCAACACAATCTGACCCAACCTGTCCCAGAATCCTCGGCAAATAGCAACAAATATTCTGCTGGAAAAGACTTCATGTAGATTGTAAATGGAATCAGAGAGATGAACACGGAGAGCCTGCATCCTCTCACGTATATCGCTTTCTCCTTCGCTTTCTCTCGTTTCTTCAAGAATCCGTTTTAGCCTAGTGGTCCGGTTAGCTTGTGCATTACTGACAAGCTTCTCCACAATTGCTTGCAGGTATTTCTTGTACTTCTTCCTCAGCATTACTGTGATGGAGTTCATTTGCTCTCCGAAAACAGCATTCCCATTTGTTATTGTTAGATATGCTGCCCATGATTTGAGACTATCTTCAACTCGGCAGTGTAACACGTCTAACATTCTTTTAACTGTGTTCATGAATGTTCCTAACTGATTCGGTACAACATAAGGGCTTATAGATTGCCTTCTTGTCAATCTTTGAACCTGCTTCTCAAGAATTTTCGGTATGCCGTCTCTCAGAGGTAGTAGAGTTTCCATGTATTGCTTCTCCAGTGCCTTCATAATTTCTCTCTCCACATCAGCAATAGCACTCTCTAAACTCATCAGATAATGTGGCCATCTGTTGATAACTACTCCATATTCATTTATGCTTTCTTTTATTTGTTCATACATTTGCTCGACAAATGTCGAGGTTGTTGAGACTGCAGGGCATGATAACTTATCAGCTCTGCAATTGTCAAGTAACTGCAATCGGGTATCTTCAATCCACACCATGATGTAGCCATGAAATAAATCCCTTGAAACCACACCCCCATGCACAGGTCTCACTTGCCAAGAGTCAAGATCTCTCTCAAAATCTGCAGTAGCAATGAGCAGTTCAGCAACATGCTCTAGTGGTCTTGATGGGGGACTTGCAGAAAGAAAACCCTTCAATCGTTTGCAGAGCTCGGTACTGTACAGGGATGCTGCTATATTTGGCAGATCTATTGAACTTGGAAGTATATTCTGATTGTGAATCTTAATATCTGCTTGAATTTCACGACTTATGTTAATACATATAGTCTTCATTTTGAGATATGCAGCAGAAATAGCCATAGGGTCCGTAAGAAGGCTGTCATTGTTGCTTGACATGAATTCGTCTGTCTCAATCATATGCCTCCTGCACCTTTTTGCCGCAGCAGTCTGTAAATAGTTCCGGAGTATGTTTTGTGCTTCATTGGAGAGTATGTCATGCAGTACACTGAATATCTGAACTGCAGGTGCTAAAGCTGGGGCAGCACAATCTGATATGGGACCAAATAGGTCAGACAAACCAGTAGGAGAATTCTCATCCAAGGACTTGTAATTTTCAAACACAACTGCAAGGAGACTCTTGATCCGATCTTCGCAATCTAATAGTATGCTTCTCTCTTGTCTCGTCAAAGTCCTATCATCACGTGCTTTCATTACAGGGAGAAGCAGTTCATATGCAAGTTCCAAGCAATCTTTTGTTGGTGTTGCAACATTCAAAATGTAAGACAAGTATCTCAATTTTCTATATGCGTCTGATACCCCATAGTAATCTGAAAACTCGTCCAATAGCCATTTCCATGAACCACTGACATGCAACATTTTGCTATTGAAATTCTGAGCTCTCATTGCTGCTTCCAGAACCATGTCATATACAATAGTATCCACAGCTGGACCGCCTTGCAGCATCTTCGCAGCTCCTTGATTGTCAGAAGAGACAGAGAAGTTTATACAAAGCTGAATTTTTCCCACGCATTCTTGATCATCAAGATATAAAGGCCACCACTTAATGATTTCCTCCTGCTGTTTTTTTTCCCCACAAACGTGCCAAGTTGAGAAATGGGTTCATGAAACAATTGCTCCAAATGAAGGTGAGCAACGAGCAGGACATACATGAGTATCAGTGATCGATGAAACTTGAATTTTTGCGCGGCCTATGACAACCCTATTATTGTCTTGTACTTCGACAAGAATAGAATCCCCCTGGCTCTCTAGATAAAAGAGTTGAGATTCACCAGTGCCTGGTTTCAAATATTGTGGAGAAATGGAATCTCTCTGGTTATCCTTGCAGGAGCTTTGCAATTCTAGCGTGCATGTGAACATTTCTTCTGGCAAAGATGTTGATGATGTGGATGTCAACATGGTAACCTGACTCTTCAGGATTTTAGAAATCTGTCTGACATACTCGCTACCAGCTTGCATGTACAGATTTCTAAAGGATGATGTTGCCCGAAGCTTTGGTCTTTGAGGTACAACACGTATTTTTTTTACTTCAATCTCAATCTGTTTAACAAGTTTTCTTCCCTTCATATTGCAACTCCCGTCCTTATCATAGATACTTTTTCCGTCATCTTGACTCTTGTGCTTGGGATGAAGCAAAAAACTCTGTATCCCAAAGGCGCTTCTCAGTACCATACACTCATCACGAAGGAATTCTGGAGCCTCCATGCAGTTTCTTGCCCATGCATTCAGACAGATCCGAAAGCACGCATCATATGCAACAAAAGATTGCCATGCACTTTGGACATTAGCCGTGAAACTCGGCATCTGAGCTAACAAATTGCTCTCGACGTACGGCACATGAACACCATCTTCTTGAACATTTGATCTCGTAGGAAGCTCAGGCTCATGAACATCCTGGGCCAGTATATCTGCCACTGATGATACCCCAGCCCTTTCAAGGCCTCCTTTCGTTTCAGCAACAGTGTCAAAAATGGCCTCAACCCCATCTCCTGCAATTGGAGGGGCACTTGGTGTCCCAATGGCTTGAAATTTTTGCTCACCAAAATAATGTTCATGCGAGGTGGAATCCACGGTATTGTTGCCGCTGGAGCATTTCCCGGCGAAGGCGCTCGCGGCCCGCACCTCCACCCGCAGGTTCTCCTTGGACTGCCCGCGAACCAACCCGCCGCCCCCGCCCCTCCGGCTGAGCTGCGAGGTGACCTCGTCGTCGAACGCTACCCCGCCGCGGTCCATGGCCCTCCGGAGCAGGCTGGAGTCGCCGCTGGAGCACGCCCCGTCCTCCTCCTCCTCCTCGAGCGTGTCGGAGAAGTTGCCGTAGTAGCAGTCATCGGGCACCCCCCACGACGCCACGCTCTCCTCCCCTTCCTCCCCATCCTCCTCCTCGGAGTCCGCCGCCGCGAGAAGCACGGAGTGGTGGTGCCGCCCAAGCAGCCCGGAGTGCCGCGCCGTGGTCCGCACCGGGGGGAGGCTCTTGGGGGAGAACAGCCCATTCCCCACACCTCCGCCGACGCCGACGCCGACGCCGGAGCAGCCCCTCCCGTACAGCGCGGGGCTCCTCGGCGCCGCGATCTGCCCCGCGGGCAGCCGCTCCGCCAGCGGCGACCTCGGCGGCGGCGGCGCAGGAGAG

Explanation	CPC Score
noncoding (weak)	-0.748084

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0150900.1	2	5511672	A	G
Osa02LNT0150900.1	2	5511683	T	C
Osa02LNT0150900.1	2	5511662	A	G
Osa02LNT0150900.1	2	5511776	T	C
Osa02LNT0150900.1	2	5512022	G	A
Osa02LNT0150900.1	2	5513197	A	C
Osa02LNT0150900.1	2	5513605	C	G
Osa02LNT0150900.1	2	5514425	T	G
Osa02LNT0150900.1	2	5514428	A	T
Osa02LNT0150900.1	2	5516145	T	A
Osa02LNT0150900.1	2	5516392	C	G
Osa02LNT0150900.1	2	5516872	T	C
Osa02LNT0150900.1	2	5517404	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0150900.1	osa-miR5797	Cleavage	3.5	14.794	1	21
Osa02LNT0150900.1	osa-miR7695-3p	Cleavage	5.0	17.287	1	21
Osa02LNT0150900.1	osa-miR171a	Translation	5.0	16.238	1	21
Osa02LNT0150900.1	osa-miR396c-3p	Translation	3.5	15.918	1	21
Osa02LNT0150900.1	osa-miR156k	Cleavage	4.5	11.816	1	21
Osa02LNT0150900.1	osa-miR159a.2	Translation	5.0	15.136	1	21
Osa02LNT0150900.1	osa-miR164e	Cleavage	4.5	16.351	1	21
Osa02LNT0150900.1	osa-miR414	Cleavage	4.0	18.991	1	21
Osa02LNT0150900.1	osa-miR1441	Translation	4.5	13.712	1	21
Osa02LNT0150900.1	osa-miR1853-3p	Translation	5.0	15.502	1	22
Osa02LNT0150900.1	osa-miR1856	Cleavage	5.0	20.125	1	21
Osa02LNT0150900.1	osa-miR2095-3p	Cleavage	5.0	22.517	1	20
Osa02LNT0150900.1	osa-miR2104	Cleavage	5.0	16.873	1	22
Osa02LNT0150900.1	osa-miR2864.1	Cleavage	4.0	21.046	1	21
Osa02LNT0150900.1	osa-miR2878-5p	Cleavage	5.0	23.326	1	24
Osa02LNT0150900.1	osa-miR5155	Cleavage	5.0	17.367	1	24
Osa02LNT0150900.1	osa-miR5503	Translation	3.5	14.383	1	22
Osa02LNT0150900.1	osa-miR5519	Cleavage	4.5	18.741	1	21
Osa02LNT0150900.1	osa-miR5521	Translation	4.5	9.922	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0150900.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0150900.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0150900.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0150900.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus