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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0151200.1

GTAATAACAATGTCCAATTATGCACAGCGAGAAGATATCACAATATGAAACTTATGTTAACACAATTAGCAGTAAAGAATATGTTACGTTTACTTAAGATAGGGATGCCATCCTGTCTCCAGGAATACCGCAGTTATCACCCACAAGCTTTGAAAGGCTGAAGTTTTTCTGAGTACATTCTCGGTGATTCATAATTTGACCCCACAAACAACACCCTTCATCACTCATTTAACCCACTAATCATATAGGCCTTCCTGCTCCCAGCCGTCCACGAGGAAATCTACCATTTCACCAAGAGGGATCGCTTGTGGAAATGGTTTTGTGCTTCCTAGAAGGCTCTCATATGTAGCATTCCAACTTATTTTTGGCTCTCGAGGTTGTTGACGCTGAGAATTGTGCCTTCTGTTTCCAACCCACTGTTGCCTAGTCTGGTTCCACAGGAGAAGTCCTTGATTTACAAACTCATTTGGGTTGGTGCTACTTCCAGCTCCATGCTGATCGCTCGATTGTGCTGCCGTACTGATTGAAGACATGCTACGCTGAGATTGCATGGCACTATTCTCCATTCCCGGCGGGCTTGAACTCCAAAAGTCCTCCGACAAACTCCGCTGCTTTATTGAGCGCCCTTGAATTCTTAAACCTTTTGAAGGCTCATCAACGGCTATTATTGGAGTAGGTTTCGCACATCCAAAACAATTTCCAACGCAGGCGACGAGGCGACGCACCCACGACGTCAGGGACGAGCAGCCTAGCAGCATAGCATCCGGCTCCGCCTCCCCCGCCCCCACCACGGCGACAGAAGAATGAACTGAGCTCAACCTCCCCCCACCTCCACTCGAAACCCTAGCACACCCCCTCGAAACCCTCCTCCTCCTCCTCCTCCACCCGCGCCCGATCAATCGATCGATCCAGAGTACACGAACAGACGAACACAACCACGACCGCGATGGCGACGGCGACGGCGTGGGCGGCGGCGGAGGCGGAGGCGGGGGGGCTTATCTGGTGCGAGCTAT

Coding Potentia
Explanation CPC Score
noncoding -1.1916
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0151200.1 2 5640809 C G
Osa02LNT0151200.1 2 5641005 C T
Osa02LNT0151200.1 2 5641183 A T
Osa02LNT0151200.1 2 5642868 G A
Osa02LNT0151200.1 2 5643083 T C
Osa02LNT0151200.1 2 5643118 A G
Osa02LNT0151200.1 2 5643752 A G
Osa02LNT0151200.1 2 5644186 A C
Osa02LNT0151200.1 2 5644200 A C
Osa02LNT0151200.1 2 5641522 C A
Osa02LNT0151200.1 2 5641387 C G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0151200.1 osa-miR5788 Cleavage 5.0 10.854 1 21
Osa02LNT0151200.1 osa-miR169n Cleavage 5.0 18.228 1 21
Osa02LNT0151200.1 osa-miR169o Cleavage 5.0 18.228 1 21
Osa02LNT0151200.1 osa-miR2094-5p Translation 4.5 18.734 1 21
Osa02LNT0151200.1 osa-miR396b-3p Cleavage 3.5 17.051 1 20
Osa02LNT0151200.1 osa-miR396a-3p Cleavage 3.5 17.051 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0151200.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0151200.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0151200.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0151200.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus