>Osa02LNT0151300.1

CCTAACATTCTTTTGTTTCGTTACAGTCAACTGCAGACTTGCAGAGAGGTTGGTTTGCTTCTTCAGAGCTCCATCTCAAATCTTACCGAGAAGTTTCCACCGAGATCTGTATAGAAAAGGGAAATCCATCTCTGATCGAATTCAGATGTGCCCGTCAGACCCAGATACGCGGATACTCATGCTCCTGTCAAAGCTCAGGAGCAGAAAGAGTTCTTCCTTCAATGTGTGATGATCTCAATTTGTATGAACAAATTTTCCCCCTTATTCAGTAGCAAAAGGAGCCTTCAGCAGATCATAACTCAACAACTAACTAGATCCCGGGAATGCCCACTGTGTCTCATCATGGGCGCTTGATGATCTGATGAGTACTACTCTTTTTTATTTCTTCCATTCATATTTAGGAGAAACATTGCGGTCAAGACTTTTCAACTCTTATCCTGAAGGCAAAATACCATCTTTCACTTCGGGGGAAAAGTTAGCACCTACCCAACCAATAACCCCATGCTTCAACAGTATCTCTACAGTCAGCCATGCCAATAATGATGGCTGGTATGGAAAATAGACAGAAGAATTTAATCGAGTGATAGACTTTTCTTCATTGTCTCATAAACAAGATATGTTATACTTGCAGCTGGAACCACTTTGAGAAGATTTGGTACAAGCCCTTTGTAGAATCCGGAAATTCCCTCATGCTGCAGTGTTTTCCAGAAAACATCAGACATCCCTCTATATGCAGCCTCTGAATTGGCTCGTTGAGCTTGCAGTCTTGTTCTGATGACTTGCAAAGGGTAAACACATGTTGCTCCTAGAGCTCCTGAGACTGTCCCACAACCTAGTTGGACTAAAGGACCAGGATCGCTATCCTTGAGGACATATGTCTTGGACATTTCTTTCAGTGTTTCATAAACAGTAAGATCAATTCCAGCATACGGAACCATACCAAGCAATGATGGAACGAGGCCTCTGTAAAATGCTCGAGGACCTTCCTGCATCCAAATGTCTCTTGATAGTGCACCAAGGCTAGGAATTTTACCACTACCACATGCAAAAGTCTGCAGTCGAGTCTTTACTAAATCTATGGGATAAATTGCTGTCTGTGCCACTGCTCCAGCCAAACCACCAGCCATCAGACGTCCAGAAGTACCAATGTCGCTCTTATTTTCTCCTTTACTTTTCATTATGTATTCTTTTAGCATTTCGTAGGCATAAAATCTTATTGCACTTTCTGGAGCAACCTTTACCACATTTAATCCATTTCCTCTGAAGAAACCACGCAGACTGCCCTCTCTCCATATATCCTTCACTGCTTGTAATACTGTAATACGGTTTGTTTGTACTTGCATGATGACTTTGAGACGGTCAAGAGGTGCAGTAGCAGTACGGGATGTTGCACCAGAAACACCTCCTGCAATTAGATATTTGCTTGCGCTTGCATGTTTACTTATTCGTTCTGGTATAGCAGCCTGCTCGCCTATATCTACAAGGCAGACTCTTTCCCAATGATGGTAGATGTTCTCAATGGTTGCCTCATGAGGGTAAAGCAAAAGAAAGTCCCTCCATTCTTCAAAAGTAATAATTCCATTATTATCCTTATCCACATGCTCAACAAATCTTGCAAGCTCCTCGTCATCAATTTCTATGCCAGCCTTGACGAGGGCGTGCCAGAGCTCCTCGGGGAGGATGCAGCCGTTGTGCTCGACGTCGATGGCCTGGAAGATGCGGTAGAGCTCCAGCTCCTTGTCGTCCATGTACCTGCGGAAGTCGTCGTAGCCGACGCGGCCGTCGCGGTCGCGGTCGCACGCGCGGAGCAGCTCGCGGGCGTAGCCGCCGCCGCCCTCCTCGGGCGGCGGCGGCGGCGGGAGGTGGAGCGCGGCGAGGCCGGCCTCGATCTGCGCGTGGTCGAGGTGGCCCCGCCCCGCGGCGTCGAAGAAGCCGAACATGGCGCGGATCCGCGCCTCCCTCTCCGCCTCCGTCTCGTGCAGCGCCAGCAGCACGTGCTCCATCGTCGCCGCCGGCTTCCTCGCCGCCCCGCACCCTCCCCCTCCCCCCGCCACCGCCACCTCCGCTGCTGCTGCGGATGGGCGGGGGGGCTCCGCCGCATGGGTCGCCACCGCGCCGGACATGGCGGCCGCGACGGCGAGGGTTTTGGGGCGGGTGATCGGTGAGGGCGATGCGAGGGTGAAGCGGAGGTGGTGTCGGAAGGGAATATTCTGTCACGATGGCGATGCTGTTGCTGATGAGCTCTTGAGCTGCTTGCTCATCAAAAGGAGAAGAGCCTCTCTCTCCCTGCAACGCTAC

Explanation	CPC Score
noncoding (weak)	-0.364082

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0151300.1	2	5665560	A	G
Osa02LNT0151300.1	2	5664441	A	G
Osa02LNT0151300.1	2	5665186	A	C
Osa02LNT0151300.1	2	5665453	T	A
Osa02LNT0151300.1	2	5665473	A	G
Osa02LNT0151300.1	2	5666573	C	T
Osa02LNT0151300.1	2	5666976	C	A
Osa02LNT0151300.1	2	5667094	C	G
Osa02LNT0151300.1	2	5667171	C	T
Osa02LNT0151300.1	2	5663573	C	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0151300.1	osa-miR5078	Translation	4.5	15.78	1	21
Osa02LNT0151300.1	osa-miR5144-5p	Cleavage	4.0	14.893	1	21
Osa02LNT0151300.1	osa-miR5524	Cleavage	5.0	14.927	1	21
Osa02LNT0151300.1	osa-miR2865	Translation	4.5	19.289	1	22
Osa02LNT0151300.1	osa-miR5524	Translation	4.5	13.054	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0151300.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0151300.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712
Osa02LNT0151300.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0151300.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus