\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0151300.2

ATGAAATAGATGGAAAAAGAAAAAAGCTAGTATGCAAACACAGTGATCCACGAGAACGGTAGATAAGCATATAAAAGAGCGAGCAGCTTACCGCTTTCTTACATTCTCTCTTGTTAGTTAGGTTATTATGTTGCATGATGCAGTGGGTCACCAGAAGACGATGCCCAGGTTGATCATGTAGTTACATATATGTAGGTATATAAGGTAGAAAGTACATGTAAAGCAGTGCCCTGCTGGGCAGCTTCAAGGAAGGTGAAGGTCACACCTCATGCTCCTGTCAAAGCTCAGGAGCAGAAAGAGTTCTTCCTTCAATGTGTGATGATCTCAATTTGTATGAACAAATTTTCCCCCTTATTCAGTAGCAAAAGGAGCCTTCAGCAGATCATAACTCAACAACTAACTAGATCCCGGGAATGCCCACTGTGTCTCATCATGGGCGCTTGATGATCTGATGAGTACTACTCTTTTTTATTTCTTCCATTCATATTTAGGAGAAACATTGCGGTCAAGACTTTTCAACTCTTATCCTGAAGGCAAAATACCATCTTTCACTTCGGGGGAAAAGTTAGCACCTACCCAACCAATAACCCCATGCTTCAACAGTATCTCTACAGTCAGCCATGCCAATAATGATGGCTGGTATGGAAAATAGACAGAAGAATTTAATCGAGTGATAGACTTTTCTTCATTGTCTCATAAACAAGATATGTTATACTTGCAGCTGGAACCACTTTGAGAAGATTTGGTACAAGCCCTTTGTAGAATCCGGAAATTCCCTCATGCTGCAGTGTTTTCCAGAAAACATCAGACATCCCTCTATATGCAGCCTCTGAATTGGCTCGTTGAGCTTGCAGTCTTGTTCTGATGACTTGCAAAGGGTAAACACATGTTGCTCCTAGAGCTCCTGAGACTGTCCCACAACCTAGTTGGACTAAAGGACCAGGATCGCTATCCTTGAGGACATATGTCTTGGACATTTCTTTCAGTGTTTCATAAACAGTAAGATCAATTCCAGCATACGGAACCATACCAAGCAATGATGGAACGAGGCCTCTGTAAAATGCTCGAGGACCTTCCTGCATCCAAATGTCTCTTGATAGTGCACCAAGGCTAGGAATTTTACCACTACCACATGCAAAAGTCTGCAGTCGAGTCTTTACTAAATCTATGGGATAAATTGCTGTCTGTGCCACTGCTCCAGCCAAACCACCAGCCATCAGACGTCCAGAAGTACCAATGTCGCTCTTATTTTCTCCTTTACTTTTCATTATGTATTCTTTTAGCATTTCGTAGGCATAAAATCTTATTGCACTTTCTGGAGCAACCTTTACCACATTTAATCCATTTCCTCTGAAGAAACCACGCAGACTGCCCTCTCTCCATATATCCTTCACTGCTTGTAATACTGTAATACGGTTTGTTTGTACTTGCATGATGACTTTGAGACGGTCAAGAGGTGCAGTAGCAGTACGGGATGTTGCACCAGAAACACCTCCTGCAATTAGATATTTGCTTGCGCTTGCATGTTTACTTATTCGTTCTGGTATAGCAGCCTGCTCGCCTATATCTACAAGGCAGACTCTTTCCCAATGATGGTAGATGTTCTCAATGGTTGCCTCATGAGGGTAAAGCAAAAGAAAGTCCCTCCATTCTTCAAAAGTAATAATTCCATTATTATCCTTATCCACATGCTCAACAAATCTTGCAAGCTCCTCGTCATCAATTTCTATGCCTGCAAACAGCAAACAGCCTTGACGAGGGCGTGCCAGAGCTCCTCGGGGAGGATGCAGCCGTTGTGCTCGACGTCGATGGCCTGGAAGATGCGGTAGAGCTCCAGCTCCTTGTCGTCCATGTACCTGCGGAAGTCGTCGTAGCCGACGCGGCCGTCGCGGTCGCGGTCGCACGCGCGGAGCAGCTCGCGGGCGTAGCCGCCGCCGCCCTCCTCGGGCGGCGGCGGCGGCGGGAGGTGGAGCGCGGCGAGGCCGGCCTCGATCTGCGCGTGGTCGAGGTGGCCCCGCCCCGCGGCGTCGAAGAAGCCGAACATGGCGCGGATCCGCGCCTCCCTCTCCGCCTCCGTCTCGTGCAGCGCCAGCAGCACGTGCTCCATCGTCGCCGCCGGCTTCCTCGCCGCCCCGCACCCTCCCCCTCCCCCCGCCACCGCCACCTCCGCTGCTGCTGCGGATGGGCGGGGGGGCTCCGCCGCATGGGTCGCCACCGCGCCGGACATGGCGGCCGCGACGGCGAGGGTTTTGGGGCGGGTGATCGGTGAGGGCGATGCGAGGGTGAAGCGGAGGTGGTGTCGGAAGGGAATATTCTGTCACGATGGCGATGCTGTTGCTGATGAGCTCTTGAGCTGCTTGCTCATCAAAAGGAGAAGAGCCTCTCTCTCCCTGCAACGCTAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.789979
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0151300.2 2 5664441 A G
Osa02LNT0151300.2 2 5665186 A C
Osa02LNT0151300.2 2 5665453 T A
Osa02LNT0151300.2 2 5665473 A G
Osa02LNT0151300.2 2 5666573 C T
Osa02LNT0151300.2 2 5666976 C A
Osa02LNT0151300.2 2 5667094 C G
Osa02LNT0151300.2 2 5667171 C T
Osa02LNT0151300.2 2 5665560 A G
Osa02LNT0151300.2 2 5663573 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0151300.2 osa-miR5834 Cleavage 4.5 16.281 1 21
Osa02LNT0151300.2 osa-miR2926 Cleavage 5.0 24.608 1 20
Osa02LNT0151300.2 osa-miR5078 Translation 4.5 15.78 1 21
Osa02LNT0151300.2 osa-miR5144-5p Cleavage 4.0 14.377 1 21
Osa02LNT0151300.2 osa-miR5524 Translation 4.5 12.391 1 21
Osa02LNT0151300.2 osa-miR5524 Cleavage 5.0 14.927 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0151300.2 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0151300.2 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0151300.2 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0151300.2 2 qEML-2 Morphological trait Seed R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus