>Osa02LNT0151600.1

AAGAAGCAACATACTAGTTAATAATAATAATACTTCTCAAGCGCAAGCGTTTCGGGTTACACGACTCGATCGAAGAGCAAACATGCCGAAAGAAACAGGAAATAAAACGGGTAAAACATAGATAATCAGGGGTCGACGGGTCCTCCCAAATGGGAATCAGAACCAAATCTAAAACGGGAAGAAACAAAACTAGTAAAACCATGGGGAGATTTCTTTTGCATTCTACTTTCTTCTTCTTCTTATGTAGACATCACAACTCTTAACGCTGCTTCTGCTGCTCGTCGTCACTGCTGCAAGCCTCATCGGATCCAGATCGATCGGACACGTACGGCAAATTACACCTCAGTGCCGGAGTCCCGCGGTGCGTTGCACCTGAAGCACTCCATCCTGCTGGCGAAGTTGTGCTCATTGCATCCAGACCTGGTGCAAATCCAGTCGCCAGACTTCCAGCCAGGGCGGCTGGCGCGGACGGCGCCGCTGCCGAAGCCGTAGCCCCGCGAGCGCGACATGTCCCCACCATCAAAGGCACCAGCGCCGCCACTGTTGACGGCAGCATCGTCCTTGAAAGCAGCGCACTTGAAGCAGCTGGAGCGGCTGGCGAAGTTGTGCGCGCCGCAGTTGCAGTACCAGTCACCTGGGCGGACATCAGAGCCAGTGCCAAAGCCTCCACCGAAGGAGGAACCACCACGGCCGCCGAAGTTGGCGTAGTCACCGCCACCACCGCTGCCGCGATCAGCGGCGCCACGCGGCTCGCCGCAGCGCTGGCATAGGTCCCGGCGGCTGAAGTTGAGGTGCTGGCACGCCCTGCAGTCCCAGTCTCCTGGCTTCCTGTTCATCTTGTCTTACCCTGCTCTCTGGAGACTCGTCGGCGTCCTCGCACCTGCGGACTTCGGCGGCGGCGGCGGCGGCGGCTCTTTAATCCAACCCGCGGCGTTTTTTCTCCCTTTTTTTTCTTTTTTTTGGAGGTTTTTATTTTTCTTCGTCTTTCTCTCGTGTTCGTCTCGCCTCGGCCCACGAGGAGGTTCACGCGGCGGCACCGAC

Explanation	CPC Score
noncoding (weak)	-0.61851

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0151600.1	2	5799490	C	A
Osa02LNT0151600.1	2	5799579	T	A
Osa02LNT0151600.1	2	5801219	T	C
Osa02LNT0151600.1	2	5801862	C	G
Osa02LNT0151600.1	2	5802426	G	T
Osa02LNT0151600.1	2	5802610	T	G
Osa02LNT0151600.1	2	5802732	T	C
Osa02LNT0151600.1	2	5802806	A	G
Osa02LNT0151600.1	2	5804975	C	T
Osa02LNT0151600.1	2	5806019	G	C
Osa02LNT0151600.1	2	5805464	G	A
Osa02LNT0151600.1	2	5800072	G	A
Osa02LNT0151600.1	2	5800279	C	G
Osa02LNT0151600.1	2	5800449	G	A
Osa02LNT0151600.1	2	5801196	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0151600.1	osa-miR1850.1	Cleavage	4.5	23.738	1	21
Osa02LNT0151600.1	osa-miR1858a	Cleavage	4.0	12.769	1	21
Osa02LNT0151600.1	osa-miR1858b	Cleavage	4.0	12.769	1	21
Osa02LNT0151600.1	osa-miR5485	Cleavage	5.0	12.063	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0151600.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0151600.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0151600.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0151600.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus