>Osa02LNT0152000.1

TTAATAAAAGCACAGAGGACCTTTATATCACTTTCATCATAATTCAATCACTCCCAGAGTACTTACAAAAGAACCTACAGGAACTATACATCACTTGCATATATACTTCTAGTTACATATATTGCAGAATATCCAAACCCCTGTAGAGGCAGCCAACACAGAGAAGTGTCACTTCGTCGGTCCTAAAATTGCTCACCAGATTGAGGCATAGCTCCTGCGTGACTGCGTCTGCTGGTTGCTTGTCATCGCGACAGAAGGTCCGGCGGGGATCCCCTGTACTCGTCGCGTCCGGCGGAGGCGGCGCCGCTGGCTGTGGACGAGGAGGGGAACAGGGACTCGATGTTGTCGGAGACTCGATCTGCGCCCAGCGAATGTGGAAGGAAGGAGCCAGCAGCGGACGCGGCACTGGTCATGGCGCCGCCGGTGTTGCCGAACCTGTAGGACGTCGAGGTCGTCTGCTCGGTGACCTCGGGCTGCTCCGTCGACGCCGCGGCGGGCAGCGTTGGGTCCTATCTTTCCAATCTTTCTACTCCCTCCGTCGATCAGCCCCATCGAGTATTTTTCTCTCTTTCTTTGCAGCTCTAAGGTTTTTCTTCAATTGTGAATATATGTAGTGACCACCCTTGGCAAGGTTGCCAAATAAGACATGCTGCCGCAACACGACTTCACGCCATCTTGCAAATATTCGGCTTGCCGAGTGCCGCCTCGTAGCACGCCACGAACTGAGCCTCGAGGTCCAGGAAGGTGTTCACCACCACGCCGTCGGCGGCGAGCATCGCCTCGATGGCCTCGTCACGGAGCGCTTCATAACCCGGAAAGTTAAAGAAGCCGGGAGCCGTGCCCTTCGTCACCGTCACGCGTACCGGCATTCTAGGCACGACGTAGGTCGTCTCCTGTTCGTCGTCGGCGACGATCTGCTCGTGAAGACCATGCACGACGGCGTTGAGGTCGCAGAGCGAGTAGAAGCACGACGGCCCGTGGAAGAAGAGCCGCGGGATGCCGATCCTCCAGGCAACTCCGGCGGCCCACGTGTTGCACCAGTCGGAGATGATGCAGCTCGGGCGCCGCTCCAGAGCGCGCACGTAGGCCTCGAAGGGCGCGTCGAGGGCGCGCATGGCGATGAGAAAGGGCGTGAGCTGCGCGTCCTCCGAGAGCTTGTCGGCGTTCTGGCAGTCCGACGGCAGGCCTGCCACGGCCGGCGAGAACGGGAGCTCCACGATCTCGAGGGGCAGCTTCTCGCGCGCGGCCTTGTCAGCGACGCCGCGCAGCCTCGTGGCGTTCAGCGGCGTCGTGACGAGGCTGGCGCGTGCGCCATGCGCGGCGAGGAGGCCCGCGAGATCGACCATGGGGATGACGTGACCGTGCGCCGCGAGAGGGGCGAGGACGAAGTGCGGCTGCGGCGAAGGCGGCTGTGTTGTGGACTCAGCTGTCATCGGTGCTGTCATCAGTGCCTTCTCC

Explanation	CPC Score
noncoding (weak)	-0.94471

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0152000.1	2	5965655	G	C
Osa02LNT0152000.1	2	5965726	T	C
Osa02LNT0152000.1	2	5966051	A	C
Osa02LNT0152000.1	2	5966238	T	G
Osa02LNT0152000.1	2	5966414	A	G
Osa02LNT0152000.1	2	5965093	T	A
Osa02LNT0152000.1	2	5965272	T	C
Osa02LNT0152000.1	2	5964615	C	T
Osa02LNT0152000.1	2	5964654	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa02LNT0152000.1	DTM_#DNAt_MULE_japo_Os0220	Chr2	-	5959533	5965411	1038

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0152000.1	osa-miR167c-3p	Cleavage	4.0	15.169	1	23
Osa02LNT0152000.1	osa-miR168a-5p	Cleavage	2.5	19.807	1	21
Osa02LNT0152000.1	osa-miR444a-5p	Cleavage	5.0	14.064	1	21
Osa02LNT0152000.1	osa-miR1429-3p	Cleavage	5.0	14.022	1	21
Osa02LNT0152000.1	osa-miR810b.2	Translation	5.0	6.776	1	21
Osa02LNT0152000.1	osa-miR396f-3p	Cleavage	4.0	10.501	1	24
Osa02LNT0152000.1	osa-miR5486	Translation	3.5	13.559	1	21
Osa02LNT0152000.1	osa-miR3979-3p	Cleavage	4.5	8.999	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0152000.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0152000.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0152000.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0152000.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus