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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0152400.1

CCATGGCTCGGTCGGATGCAGATCCACGGACTTGGCCCTCTCCGACCTCTGCGCGAGCTTCCTCTTGATATCCAACCTGAGCGGCATTGTGACGCCCGCGACGGCCGGCTACGGCGGGGACGCGGCTGTTACACAACCTCCGCCGCCGTTCACCGCCGGAATCAGGCTAGATCTGATCGGAGTTGAGGAAGAGAGTAGTATCTTCGAAATCGCTCAAGATCGAGAAGCAGAGGAACTGAGGAAGAAGAAGTTAGAACAGAGTTGTCG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.933235
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0152400.1 2 6128892 C G
Osa02LNT0152400.1 2 6128909 A C
Osa02LNT0152400.1 2 6129014 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0152400.1 osa-miR166a-3p Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166b-3p Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166c-3p Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166d-3p Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166f Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166g-3p Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166h-3p Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166i-3p Cleavage 3.5 24.069 1 21
Osa02LNT0152400.1 osa-miR166m Cleavage 5.0 24.069 1 21
Osa02LNT0152400.1 osa-miR166j-3p Cleavage 5.0 24.069 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0152400.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0152400.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0152400.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0152400.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0152400.1 2 tms5 Physiological trait Sterility nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus