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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0152600.2

GTGCAAGCCAGACTTCTTAATTCATTTGAACATGCCTCATTATCCCAACCAGGAGATGGAATCGTAGGATCTTGGTGCCTGTGGTAGCAAGAGAGGAAGTCCATCCATTGGATGAGATTTTTGAGACATCGCCTGTACATCAACCAAGGATGGAACTGATCAACTGTAGATCCAGCTAAAAATTGCATTTTTTTTAACGCAAAGAAAAGATTGACAAGGTAATATTACGTCAATAATCACATTATCTGTTTTACCCAGATGGACAGTTGTTGATGAATTTATATAGGTAGGAAGATGACAACGTACTTGACTTGCGTGAATTTTGCATGGTCACCACCATGTATTTTTTTGCTGACAATGATGTTCCACTTGCTAGTTACCTTGTGTAATTATTGCTGACGTTACTTTTGCATGGTCACCACCATGTATTTTTTAGCTGACAATGATGTTCCACTTGTTAGTTAACTTGTGTAAATTCAAAACTAATTACGTCAGGTTGGAATATTACACAGTATACTAACGGTTTCAGCCAAAA

Coding Potentia
Explanation CPC Score
noncoding -1.25232
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0152600.2 2 6213342 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0152600.2 osa-miR5530 Translation 5.0 12.905 1 21
Osa02LNT0152600.2 osa-miR5151 Translation 5.0 13.741 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0152600.2 2 tms5 Physiological trait Sterility nan nan
Osa02LNT0152600.2 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0152600.2 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0152600.2 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0152600.2 2 qEML-2 Morphological trait Seed R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus