>Osa02LNT0152700.1

ATATAATTTACTCAAACTAAATTATTGACAGACAGCTATATGATATCTAGTTTTAAATGCTACAGTTTTATTTGTTGTAAACAGCATATGTGCAAGCCAGACTTCTTAATTCATTTGAACATGCCTCCTTATCCCAACCAGGAGCTGGAATTATAGGATGTGGTTCAGATTAGCCTGTGGTAGCAAGAGAGGAAGTCCATCCATTGGATGAGACTTTTGAGACATTGCCTGTACATCAACCAAGGATGGAACTGATCAACTGTAGATCCAGGTAAACAAAATTGTATTTTTTTTAACACAAAGAACAGATTGACAAGGTAATATTACGTCAATAATCACATCCTCTGTTTTACCTAGATAGACAGTTGTTAATGAATTTACATAAGTAGGACTAGATGACAACGTACTTGACGTACGTGAATTTTGCATGGTCACCACCATGTATTTTTTTGCTGACAATGATGTTCCACTTGCTAGTTACCTTGTGTAATTATTGATGACGTTACTTTTGCATGGTCGCCATCATGTAAGTTTTGCTGACAAATGATGTTCCAACTTGTTAGTTAACTTACGTAAATTCAAAACTAATTACGTCAGATTGGAATATTACTCAGTGCTAACGGGTTCAGCCAAAAGAATGGGGCAAAGAAACAGAGGGTGCCGACTTGACACGGTCTTGTAACTCTTGTTGAACTTTGATATATAGCCATACTAAATATAGAGTAGAACATAGCAGCTGTTTTCAAACAATTTTGTTCAGAGTTCAGACCATGATGTGCTTCGAGGAGTAGAGTACTGACACTGAAAAGTGATGTCTCCTATGATGATTATAC

Explanation	CPC Score
noncoding	-1.23139

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0152700.1	2	6251574	C	T
Osa02LNT0152700.1	2	6252136	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0152700.1	osa-miR5530	Translation	5.0	11.916	1	21
Osa02LNT0152700.1	osa-miR396e-5p	Translation	4.5	19.127	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0152700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0152700.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0152700.1	2	tms5	Physiological trait	Sterility	nan	nan
Osa02LNT0152700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0152700.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus