>Osa01LNT0012600.2

GCTCATAAGATAAAATTAAATCAATCAATACCTAAACACATGAGAAAATAGTTCAATTCTCCAACATCACTTCCCCACACCTTGAAAACTAGGAAAATAAATACATACGATCTCCTAAATATCAAAAAGAAAAATAGATACATTCTCCTCTCCCTAAACTGTAGTTCACTCTTTTCATTTCATCTCCTATATTTCTACAACATACTATTATAAAATATAAAGGCGACGAAGAGACGAACTGAAGAACATGAATCAAGTCTTCGGACTGGGATTCACAGCATCAGAATCAGCGACCAGGCCAATCTTAGCTCATTTTCTCTTGATTTTCTTGCATTAGTTTCTCCAGTTCCTTCTGCCCAGTAGATATCAGTGTCTTCACAGTATCGAACGCAGTCAGTTTAATACTGCTATTTGGTAGATTTTTTAATGCATTTGGAACAAAACCTCTGTATAGTCCAATTAGACCATCACGTTCCACAATGCCTGGAATAGCATCCAAAACCGTGTTGTAGGGTGATCCTTTCATTTGCATCTGCCTTCTAACAGTGTCCAGAGGATAACACATCAAAGTTGCAAATGTTGCTGAAAGAAGAGCAGTTGCCAGAGATGTCTCTGGTCTACTCTTATACTTCTCTGGTACAGATTTCTTCATTAAGTCAAAAACACAGAAGTTCACAGCAATGTAAGGGGCGATTCCTATAAGAGACGGACCCAGGCCTCCATAGAAGGAGGCCAAACCTTCGTCTCTCAGCATGTTCATAGCAACCTGAGACATAGTACTATGTCCAGATTGAACTGCTAGCCTCAGCCGAAGAACATCCAGTGGGTAAGTTACAAGTGTAGATGTCATGCCCGCACAAGCACCAGCAGCAAGTCTCCCAAACACAGTAAGCTCTCCGTCCTTTCTCCGGAAAAATTTCTTGTAAACTTCATAAGAAAACAGTTGCACCGCACTGTAAGGAACTATGCGGATAACCTGTGGAAGATTGCCTTTCCAGTAACCCTTCAAGCCCTCTTCCTTCCCTATCTCTGCAATAGCCTCGAGGAATCCGATCCCTTTCTTGGTGCTCTCCCCCACCACCCGCACGCTGTGCGTCTGCATGAGGAGCTTGACGCGGTCGAGCGGCGCGGTGATCGTCTTGGCGACGGCCCCCGCGGCCGCCCCCGCCGCGAAGAGCGCGACGGCGTTGGGCACCAGCGCCAGCATCGCCAGCGGGTGCCTCACCAGCACCCCCGCCGCCGGCAGCTGCTGCTGCTTCCCCTTCCCCTCCCCCACCTCCCCCTCCTCCCCTCCCCCTCCCCCCTCCCGCACGGTGAGCGACGCGAACGCCGGGCCACCCCCACCCCCACCCACGCGGAGGGCGAGCGCGCGGCGGGCGTGGGGAGGCGGCGGCGTGGGTGGGGGCCTCCATGAGTCGCACGCCGCCGCATCCACTCGCCGGTGGCTCATCGTCGTCGGTGGGCAGGCGGTGGCCGGATCTGCTTGGCCGCGAGAGGCGAGGCGAGGCGAGGCGGAATGGAAGAGAGAATTAATGCGGAGGAAGAAGAAGAAGCGAAGAAGGAAGAGGGGATAAGGGGGGGAGGAGGATTGATTTCCTCCCCGTTTTATGTCGAAGCTC

Explanation	CPC Score
noncoding (weak)	-0.980937

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0012600.2	1	9025535	G	T
Osa01LNT0012600.2	1	9025594	A	G
Osa01LNT0012600.2	1	9027693	C	T
Osa01LNT0012600.2	1	9028077	A	C
Osa01LNT0012600.2	1	9026010	T	G
Osa01LNT0012600.2	1	9026593	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0012600.2	osa-miR5528	Cleavage	3.5	15.562	1	21
Osa01LNT0012600.2	osa-miR5789	Translation	5.0	17.984	1	21
Osa01LNT0012600.2	osa-miR529a	Cleavage	4.5	14.475	1	20
Osa01LNT0012600.2	osa-miR2097-5p	Translation	4.5	12.721	1	22
Osa01LNT0012600.2	osa-miR2100-3p	Cleavage	5.0	8.89	1	22
Osa01LNT0012600.2	osa-miR2879	Cleavage	4.5	22.299	1	24
Osa01LNT0012600.2	osa-miR5080	Cleavage	5.0	19.408	1	21
Osa01LNT0012600.2	osa-miR5161	Cleavage	4.5	24.011	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0012600.2	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0012600.2	1	An9	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0012600.2	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0012600.2	1	nan	Morphological trait	Root	RM7383	RM23
Osa01LNT0012600.2	1	nan	Resistance or Tolerance	Insect resistance	RM576	RM3412
Osa01LNT0012600.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0012600.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0012600.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus