>Osa02LNT0152800.1

TACACTCAAAAACTAAGTCCTAAAATTATTAGAAATTTCGGCAGAGTCTCCCTTAAAAATACGGACATCACGACAGGCAGTTATAAGAAAGGTCAATACCGATATAAACCACACAATCCAAACCATCCTAGCTCCATAAATCCCACGTGAAAAATAAGAATCAGAACCTTAAATGACCTTTACAAGTTCTATGCAAAACTTATGCTGAGCAAAAATTATAGTCTAAAACTAATTTCAATTGTGTGCAATAATAATGTGTAGTCCAAGGGTGCTACTCCCACCCCATGCCGATCGATGTCATTAGGTACCTAGCAGTACTAATGTATAAGAAAAACGAAGAATTTGGAAATATTCACCAAATTCCCCAAATTTCCCTTCTTCTATCAAATTTCCCCTTCTTTCCCTCCTTCCTGTTCTTCTCTGCCTTCTCTCCCTCCTTCAAACGACCGGCTGCGGACGACGACGGCTGTGGCGACCGGCGACGGCTGCACCAGCGGCGGCACCGGCGAAGAGAGGAACAGCAGCGGCGGCGGCAGAGCGCAGGAGGTGCGGCGGCTAGGGCTACAGGAGAATCGCTCC

Explanation	CPC Score
noncoding (weak)	-0.864574

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0152800.1	2	6408450	T	C
Osa02LNT0152800.1	2	6408456	A	G
Osa02LNT0152800.1	2	6408783	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0152800.1	osa-miR5797	Cleavage	2.5	4.496	1	21
Osa02LNT0152800.1	osa-miR2873c	Cleavage	5.0	10.508	1	21
Osa02LNT0152800.1	osa-miR7694-3p	Cleavage	5.0	14.875	1	22
Osa02LNT0152800.1	osa-miR1866-5p	Cleavage	4.5	8.471	1	24
Osa02LNT0152800.1	osa-miR1866-5p	Translation	5.0	8.287	1	24
Osa02LNT0152800.1	osa-miR2866	Translation	3.5	10.667	1	20
Osa02LNT0152800.1	osa-miR2919	Cleavage	3.5	5.132	1	19
Osa02LNT0152800.1	osa-miR2919	Cleavage	5.0	6.729	1	19

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0152800.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712
Osa02LNT0152800.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0152800.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0152800.1	2	tms5	Physiological trait	Sterility	Jan-39	Feb-39
Osa02LNT0152800.1	2	tms5	Physiological trait	Sterility	nan	nan
Osa02LNT0152800.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus