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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0153000.1

CTCCATTCTTTTATTAACATGTGCCCTTTTGTTTAAGGGGCTATTGCTTATTTGACCCCTTTTTGAATCCTAACTACCAATTTGACCCTACTTTTTAGAGTTTACTTATTTGACCCTCCTTTTCAGAAACGAAGCTCCCGTCTGACCCTGTTTCCATTAGTCCGTTAAGTTTTAATTTAAAACAAAAAAAAAGAAATACAACTAATATTCATAATACCCAGAATACCGTTAGAAAACCCTATGCATCCACCAAACCCTATCCACATTTCTCTCCTTGCGGCGACGGCGGCGACTTGCGGCGAGACGGCGAGCCGGTGCCGCCACCCCCTCAGATCGGCGCCGCCCTGGTGACGACGACGATGAGCCGGCACCGGCCCTAGTGACGACGACGATGAGCTGGCACCGGCCCTAGTGACGATGACGACGACGAGGAGTGGCGGCGGCGGCTCATCGACGACGAAGAGCCGAAGCCGGCGCCCTGCTGACGAGGACGAGGACGACGACGAAGAGCCGGAGCCGGCGCCGCCACCCCCTCAGATCTGGCGCCACCGCCGCTGCGTCCTCCCTCCTTCCGCACGCTTGCGCCAGCGCCGGCCCCCTCCCCCGCCTCCTCCCTCCTTCCGGGCGCTTGCGCCGCTGCCGCCGTCGCCACCTCCTCCCTCCTTCCGCTCGCCTGCGCCGCCGTCGTTCCTCCCTCCCTCCACGAGCCAGGACGGCCGCTCG

Coding Potentia
Explanation CPC Score
noncoding -1.01651
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0153000.1 osa-miR5805 Cleavage 4.5 11.934 1 24
Osa02LNT0153000.1 osa-miR7693-5p Cleavage 5.0 22.54 1 24
Osa02LNT0153000.1 osa-miR2907a Translation 4.5 18.03 1 22
Osa02LNT0153000.1 osa-miR2907b Translation 4.5 18.03 1 22
Osa02LNT0153000.1 osa-miR2907c Translation 4.5 18.03 1 22
Osa02LNT0153000.1 osa-miR2907d Translation 4.5 18.03 1 22
Osa02LNT0153000.1 osa-miR2927 Cleavage 3.5 22.43 1 23
Osa02LNT0153000.1 osa-miR2927 Cleavage 4.0 18.554 1 23
Osa02LNT0153000.1 osa-miR2927 Cleavage 5.0 23.754 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0153000.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0153000.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0153000.1 2 tms5 Physiological trait Sterility Jan-39 Feb-39
Osa02LNT0153000.1 2 tms5 Physiological trait Sterility nan nan
Osa02LNT0153000.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0153000.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus