>Osa02LNT0153700.1

GAAAGAGAATAGTAGTTCAGTTTTTTCACACTTCAGTATCGACCCCGAGTCTGAACTCTGAAGATCAGCTTCAAGTATACATACATACAGTACATCTAAATAAAATTGTAAATGTATAGTAATTCTAGTTCATGGTATTTTGAGCACTTATACAGGTTACATCTACACAACCATTTTTTCTTTTCAGACAACACGCATTAGAGTGTAGTGACATCTACACAAAGCAAGACCTGAACACACCGTAAACAGCTGAACACAGTAAAAGTACCATCTAACTGAAAGTTCAGACTTGGGAGAGCCACTAACTAGCCTGAAACTACAGGCTTGCCTTGCTCCTGCGACAGCTGCTGCTTGGAGTTGGATTGAGATGGTGGGTTGAACTTGGTGAAGACCCTGAAGGCGGAGATGAGGGAGAGCGCCATGAAGCAGAGGAGGGCGGCGGCGTTGAGCGCCACGGACACGGTGGCGGCGCCGCAGAAGCGGCCGAAGTAGGAGCACACCTCCCCCCACGACACCTCCCGGTCGCCCTCCCGCGCCAGGTACACCACCTCCGCCGCCGCCGACGCCGACGTCAGCAGCAGGTACGCCGACGCCTGCTCCGGCAACGGCCACCGCCGGATCAAGATTCGGTCAGTGTTTTTTATGTGTTGCCATTGTTTAACTGAATTGCTGGAAAATTTCCGCTAGTATTTGTATTTTGTCTCCAAAAACTTTTAGATTTGTGATCATCGGATTGCCTTAATATTTGTGCATGAAAAAAAATGCAAGAAAGAAATTTTCACACGGATCACGTATATGTTGCTAGCCAACCAAATCATAATTGAATACATGTTTTATATAAATTATATGGTTGTTACAATGCAGTTAAAGTGTAGTTTAATTACACTTCAATTATGCTATAATTATATTTGAAAGTTTTTCACTTAAAAAACATACGGCAATTTTTTACATACTCCCTTGTTTAATTTGATCCACAGTTAAGGATGTCTCCGAATCTCATGTGATTATACATCGATGCTTTTTTCCTTAAAAGAAGAAACACAACGCAATCATAGACCGCTCACAACGCGCAAACCCATCACTATGAACGTACGAACGGACACCTTACCTTTACGATCATATCTGATAAACTGAATTGCTATATCTACGATGCATAGATGTTGGTTCTATTAAACAGATGATATGTTGATATATACTATCATTGATGACTTGTTTTCTTAAAATTAAAAAAAACAATAATCTCCTGATGAAACTGGATTTATATTAGTACTAGGATATACTAGGTTGCATGCTGCTGCTGCTACATTTGTACATAAGGATAGTGAATTGGTATCATGTTAAGCTCAAGAAGAGTGTTTTTTTCCCTTCAATATGCTCTGTGATGAAATATGCGTCTAAAATCTGAATCAAGTAGTTCAAGATAGAATGGCATGTTTATTGCCAATATTATATTCCTTTTAGGTTTCTCTATCGGTTTATCCTGTGCCCATAATAAGAATCTAGCTTCCTTCCAGTACTAATTATTGATGTACAGTTTAGCCTTGACCAACTTATTAATTATAATCTTATCCTAGCAAGTATTAGTACTAAACACTTCCCTTGTATGTACTTATGTATATTATAATACTTACTCTATATATGATTGAATCTTTTTTTGCTGCAAAATATATGGTTAATTGATCATTTTTTCTTTCTTTCATTTTCAGATTTTCTTTTAAAGAAACAATATAGAAGTTTTCTGATGAGATGAATATAAAGAGGGAGAAGCGAGGTTAGGAGTAAAACCTGATCCAGGAGGAAAATGAGCCAATCAAAGCGAGTGATGAACCTGCAGGATGACAGCAGGATGGAGGCCACCGAGTAGGCAGCCGTGATGGCGTTGATCCAGACCAAATACCTGAAGCCGGAGAGGTCGGAGAACCTGACCTCCCCGTAGGTCTCGTCCACCTGCTTGTTGGTGGCCATCTCCCACACCGACGCCACGGCGAGCGGCACCGCGCACACCCGGAGCCCCAGCTCCGCCAGCCTGAACGGCGCCGCCACCTTCACCTTCTCCTCCTCCGCCGCCGCCGCCGCCGCGGTGCTCCCCTCGCCGCTCCTCATCTTCTCCGACGACGACGACGGAAATTTCCTTCGCCTATTCTTTCTCCGACCTGTCTCGGTGTGCGAGGAGGAGAAAATCGGTGAACTGT

Explanation	CPC Score
noncoding (weak)	-0.863301

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0153700.1	2	6682429	T	C
Osa02LNT0153700.1	2	6680313	A	G
Osa02LNT0153700.1	2	6680332	C	T
Osa02LNT0153700.1	2	6682480	T	C
Osa02LNT0153700.1	2	6682573	T	A
Osa02LNT0153700.1	2	6682857	T	C
Osa02LNT0153700.1	2	6682870	T	G
Osa02LNT0153700.1	2	6680672	T	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0153700.1	osa-miR5788	Translation	4.5	14.438	1	21
Osa02LNT0153700.1	osa-miR6255	Cleavage	4.5	12.083	1	22
Osa02LNT0153700.1	osa-miR167h-3p	Cleavage	5.0	21.436	1	21
Osa02LNT0153700.1	osa-miR167h-3p	Cleavage	4.5	23.435	1	21
Osa02LNT0153700.1	osa-miR166i-3p	Translation	5.0	17.39	1	21
Osa02LNT0153700.1	osa-miR2097-3p	Cleavage	4.5	22.83	1	22
Osa02LNT0153700.1	osa-miR2927	Cleavage	4.0	11.767	1	23
Osa02LNT0153700.1	osa-miR5517	Translation	5.0	14.026	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0153700.1	2	tms5	Physiological trait	Sterility	nan	nan
Osa02LNT0153700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0153700.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0153700.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712
Osa02LNT0153700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus