>Osa02LNT0154000.1

CAGATGGCAACAGTTAGCTGCTTGCGAAGGCAATGTCACTACCGCACAAAATATAATAGGTCAATCATACCAATACTGTTCCTAACACAAAAGGCTTTGTTTGAGGGTTCTAATTCTCTCAGCATATGAAAACTAACGGAATACAACATAGCTTTCATGTGTAGCTTCTACAGCAGACTACGGATGGGTTCAGCGACTAAAATTACACAGTTGGTCCAGTTACGAGATAATTTGATGAAACTAAATAAATGTTCTGGTGCCGCTGATTGAGTAACCCAAGATAAAACGCTGATTTTCCAGGAGGTGCACTTATTGTATCCTAGAAAAAACTCTCATGAGTTCACTCATTTCCCATATGGATGGTACCTGCTGGAACCCCGCCCACCAGCACCTCCTGCTCCAGCTCCACCATAACTGCCATATCCTCCAGCACCACCATAGGCACCCGGAGCGCCACCATAGGCACCACCACCATAAGCACCTCCGCCATAGGCACCCCCTCCATAGGCACCACCACCATATGCCCCATAAGCACCATAGGCACCTCCATACAAGGAGCCACCATAACCACCACCATATCCTGATCCAAATCCAGCATTACCTCCATAGCCATACCCTCCTCTGCCATAACCATATGCAGTACTATCATAATAACCTCCTCCAGCTGATCGGTAACCAGCACCATACCCATAGCCACCACTGCTGCCACTGACTAGATCTCCCATTACTACTGTGATCACCACCATGTTTCTTTGGCTCAGCCTTCTTTATTTCAACCTGCTTTCCACCAAGGTCACGCATTCTTCCCTCTGATATAACCCTTTCCACAGAATCCTCACTTTCAAAAGTGACAAAACCAAATCCTCTAGAACGCCCAGTGCTATGATCAAGCATTATTTGATGTTCAACAATCTTACCATATGGGGAGAAGTGCTCCCTCAACTCATCTTCAGTTAGTGATGAAGGTAATCCACCAACAAAGATTTTCCTTGTCTTTGGACCATCTTTTGATGACATTTCTTCCCTTGGGACTGTCCTTTTAACTTCAACCGTTCTTCCATCTATAACGTGCTCATCCTCCAAAACCTTGTCTATAACAGATGGATCGGAAAATGTAACAAATCCAAATCCACGAGGCATCTTAGTATGCTTGTCCTTCATAATTACAGAATCAGTTATAGCCCCATACTTCTCAAAATGCTTGGAGAATGATTCTTCGGTTGTCTCCCAAGCAACGCCTCCGACGAAAATCTTCCCCGACGAGTCCCCGCCGGGCGCCCTCCCGTCGTCCCCGCTGGCGTCGCCATACGCGCCGCCATCGCCCCCATCCCGACCGCCGCCGCCCCGTCTACCGGGTCGACCCTCCTCGTCGAACCCCTCCACCTCCTCCACCTCCTCCTCCTCCTCGTACCCGTTCATCCCGTGCTGGTTCTCCTCCGGGTACCCCGCCATCCCACACAACAACAACAGCAAGCTCGCCTCCGCCGCCGCCGCCGCCGACGCCGATGCCCCTCGGAGGCGGATCGATCGGAGGAAGGGAGGGTGGTGGGGGGGTTTGGAGGTGGAGGAAACCCTAGGCTTCGCGTGCGGGTTTAGAGGGGGGTGGGAGATTGGATGGATGGAGGAGGCGGCGGCGAGGTGAGAGGGGGGGAGTCCAACGCGTAAACC

Explanation	CPC Score
noncoding (weak)	-0.760262

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0154000.1	2	6784609	C	T
Osa02LNT0154000.1	2	6784391	C	T
Osa02LNT0154000.1	2	6785222	G	A
Osa02LNT0154000.1	2	6786741	G	A
Osa02LNT0154000.1	2	6786860	G	A
Osa02LNT0154000.1	2	6787311	G	A
Osa02LNT0154000.1	2	6788077	C	A
Osa02LNT0154000.1	2	6787873	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0154000.1	osa-miR5821	Cleavage	4.5	15.893	1	21
Osa02LNT0154000.1	osa-miR319a-5p	Translation	5.0	10.167	1	21
Osa02LNT0154000.1	osa-miR166g-5p	Cleavage	4.5	11.387	1	21
Osa02LNT0154000.1	osa-miR1861h	Cleavage	4.5	16.723	1	22
Osa02LNT0154000.1	osa-miR1861j	Cleavage	4.5	16.723	1	22
Osa02LNT0154000.1	osa-miR2122	Translation	4.0	12.436	1	22
Osa02LNT0154000.1	osa-miR2275b	Translation	4.5	12.731	1	22
Osa02LNT0154000.1	osa-miR812k	Translation	3.5	10.776	1	24
Osa02LNT0154000.1	osa-miR812l	Translation	3.5	10.776	1	24
Osa02LNT0154000.1	osa-miR812m	Translation	3.5	10.776	1	24
Osa02LNT0154000.1	osa-miR5148a	Cleavage	4.0	19.007	1	24
Osa02LNT0154000.1	osa-miR5148b	Cleavage	4.0	19.007	1	24
Osa02LNT0154000.1	osa-miR5148c	Cleavage	4.0	19.007	1	24
Osa02LNT0154000.1	osa-miR5505	Cleavage	4.5	11.556	1	22
Osa02LNT0154000.1	osa-miR5518	Cleavage	5.0	11.851	1	21
Osa02LNT0154000.1	osa-miR2275a	Translation	4.5	12.731	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0154000.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0154000.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0154000.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0154000.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus