>Osa02LNT0154100.1

GCACAATCAAGGAGACACTAATTATATGAGAACATCCATGTTACCGATCACACAAAATTGAAGCCTACAATTATATACACCTTTGTCTACATGAGCCCAGATTAAAAATAGAATTAGGCTGCAAGCTGCATTTGTCTACAATCTAATGTAAGTTCCTTGTCAGCATCTACATTTCTGAGACCTCACCATCCTCTCCTGCTGAAAGCCCTTTGGGTATATGAACGCCGAGTCGACACAAAGACCCACCTTTTGTGTGTGTGCAATCAATCTAAGCCATCGAGAACTTCAGCTTGATTGTTTGGTCAGGCTTTGAGACCACAAAATTGCCAGCATGGTAAAGTACCCAGCTCCCGGGCTCACCCAGGGAGCACTGAGATAATGAGTGCTGCCCATCAGAGGTGGAGAGCTGGAAGCGAACAGGCTTCTGGTCCCAACCATGGACATGCTCAGTGCTGCAAGCTCGGCGTCCAAATCGCTTGTAGAACCTCCCGAGATGAATCCTGAAGTATAAGCTGTAGGTTAACACACGGAAGCTGAAATCGATCTCTCCAACCACTTCAAAGCACCATATTTGCTGAAGGTATGCCACAGAGTGAAATCTGTAGGCTGTAGTTCAGTGACCTAATGACCAGGAATACACACCTCTTGATGCGCGAAAAGCCCAATAGTACAACCTTGTGCTTACCCTTTGGCTTCTTGCATTTACCATCGGATTCGAGGATGCTGGGATCGGAGGCGGCGGCGGCGGAGTCCCTGGATGCGACGGAGAGGGGCGCTGAGGTAGAAGTTGGAGGGACACCTACCTCGAACGGCCTCGGCACATAGGGCGGCGAAGCGGATCGGATCGGATCGGCGGCGCTCGCTCGCACGCACGCACTGGCGCGGCTAGGGCTAGGGTTCCCCCGCGGCCGCGAAAATGGCGTGGGCTTCGAGCTCCAGCAGCAAGCAAGGGCAAGATGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGCGAGGAGAGAGAAGGAGGCGGACGCGGCGGACTAAGGGCGAGATGGGAGGGAGAGAGAGCAGCGAGCGCGGCGGCGGCGGAGCGAGAAGGAGGCGGCCGGCACGACCGAGGTGAACGCGGCGGCGGCGCGAGGGGAGAAAATT

Explanation	CPC Score
noncoding	-1.24049

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0154100.1	2	7012811	C	T
Osa02LNT0154100.1	2	7013033	T	A
Osa02LNT0154100.1	2	7013134	G	A
Osa02LNT0154100.1	2	7013981	G	A
Osa02LNT0154100.1	2	7014455	C	T
Osa02LNT0154100.1	2	7015257	T	C
Osa02LNT0154100.1	2	7015873	T	A
Osa02LNT0154100.1	2	7017345	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa02LNT0154100.1	DTM_#DNAt_MULE_japo_Os0610	Chr2	-	7017434	7018475	8

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0154100.1	osa-miR156b-3p	Cleavage	4.5	3.184	1	21
Osa02LNT0154100.1	osa-miR156j-3p	Cleavage	3.0	16.692	1	22
Osa02LNT0154100.1	osa-miR156j-3p	Cleavage	3.5	3.975	1	22
Osa02LNT0154100.1	osa-miR5489	Cleavage	3.5	18.248	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0154100.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0154100.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0154100.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0154100.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus