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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0154200.1

GACAACCCAGCTGGCAAATTAATTAATATATCGACTGATAACGCCGTGTAATATATTATCCTGATCAGACAGATTGTGCACTGGCATAGAACATCGACAAAACTAAAGATAATTACATTTTCATCCCATCGCGGACTCCACAAATAACTCCTCCTGATGTGACCCCTCGGATCACTTATCGGCTACATTTACAACATGTTTCTCATCATTCGTATTGTTCACTTCAGATCAGAAGGTAAAAACTTCAGTCGTATCCTCATTAAAACTGACTATTGAAACCAAAACAGATGTCTACTGAACTTTCTTTGGTCTTGGAACAGAAGTGGCCAATTCTTTACTAGATGATCTGATGATGAAAAGAACCGTTTCCATCAGCATGCCACCGACTAATCCTAAGATGCCTCCAGCAGCATTCATTACAGGACTGTTGTTGAACAGAGCTCTGAAAGCAACAAATCCAACCAAATAACCCGTGAACATTATAAGAACAACATGAAGACCAAATCCAATCTGGTCCTTGTAGGAGGAGAAGAGCTCGGGGCTGTCCTCCTTCGCCGGCGGCGCGACATCCCTGACGAGTTCGGCGTACTCCTTCCTCTCCTGCATCTCCCTGAGCTTGTCCAGCCTCGCCTTCAGCTCATCGCTCTTGTCGCGTGGCTTGGGGCTGGAGAGCAGGAAGTCGGCGCCGTGGAGGAGGCGGCGGAGGGGCGGGCGGGCGCCGGGGGAGGCGGCGCACCAGATGTCGCGGAGGGAGCGGTAGGGGACGGCGGAGCGGGCGGCGAGGGAGGAGGCGAGGTCGCGGAGGTCAGCGGGGAGGTCGTGGGAGGCGGCGGCGGAGGCGAGGAAGGCGCGGAGGGGGTCGGTGGCGGCGACGACAAGGCCCGACGCCATGGCCGGCAATCTCGATCTGAAAATCTCCTACGGAGTGTAGTTAAGTCAGCTGATGGAGGAGACGGGAGGGAGCAAGGCAGGGGTGGAGAAAGGGGTCCGCCGCCGCCGGCGCCGCCGAATCGCCGGTGACTTTCCGGCCGCCGGAGCCACTTCTGCGCCTGGGTGGGAAGACTTGGGAAGGAGAGGAAGGATGGCGAGGGGAGATAATTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.423885
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0154200.1 2 7033231 C G
Osa02LNT0154200.1 2 7033740 A T
Osa02LNT0154200.1 2 7033828 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0154200.1 osa-miR5789 Translation 5.0 19.227 1 21
Osa02LNT0154200.1 osa-miR535-3p Cleavage 5.0 21.992 1 21
Osa02LNT0154200.1 osa-miR2118l Translation 3.5 23.412 1 22
Osa02LNT0154200.1 osa-miR2118p Translation 5.0 23.412 1 22
Osa02LNT0154200.1 osa-miR2871a-3p Cleavage 4.5 10.719 1 21
Osa02LNT0154200.1 osa-miR2871b Cleavage 4.5 10.719 1 21
Osa02LNT0154200.1 osa-miR5075 Cleavage 3.5 20.017 1 21
Osa02LNT0154200.1 osa-miR5075 Translation 5.0 24.983 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0154200.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0154200.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0154200.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0154200.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus