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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0154300.1

GAGTGGACGCTTTAACTCAAACGAAATGCAAAAAATACCAATTGCTTCCAGGTAAGATGTGGTCATAGGCACATATTATCATATTTGTGGATGTCCCTGAATACAGCAGTCCACACTAATTAAACCGATTATTGAAGGAAAACAAAAGGCTTAGAAAGTCTGCCGCGCGCGGCAGCACCGGAGTGTCGTCTTTCGTTATCGAGGCACGCTGAGACCCGTCTCCTGCGACACGGCCCGCGCCACCTCCGCCCCGAGCCGCGACGTCAGCCGCGCCTCCGCCACCGCGCTGTGCAGCGGCTGCAGCGACCTCGCGAGCCCCACCAGCCGCCCCACGGACGCCGCCCTGGTGACGGGAGCGACGGCTCGGGGCAGCGAGGCCGCCGGGCTCCGTCCCGCGGCGGAGCGGAGGAACGCGGCGGCGGGGCGGGAGAAGGAGCGGAGGCGCGACGCCATGGCCGGAGAGGGGAGAGAAGAGAGAGACGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.990995
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0154300.1 2 7312321 C T
Osa02LNT0154300.1 2 7312392 G A
Osa02LNT0154300.1 2 7313724 C T
Osa02LNT0154300.1 2 7314392 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0154300.1 osa-miR171i-5p Cleavage 4.5 24.332 1 21
Osa02LNT0154300.1 osa-miR2275a Cleavage 4.5 12.531 1 22
Osa02LNT0154300.1 osa-miR2275b Cleavage 4.5 12.531 1 22
Osa02LNT0154300.1 osa-miR2275d Cleavage 4.5 12.531 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0154300.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0154300.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0154300.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0154300.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus