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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0013100.1

GAGGCAATGGACAACAAGTGTGTTCTTTACCTTTGCCATCATATTCCAATATGTGAAAAGATAAATGTTACATGTAACAATCGTGCTACAGTTCAATGACACAGCTACACCTGCAAACTGTGATTTGCTCATTTGTCGAAAAATCATCTTTACAACAACTCTACGGAACCAGCCTCGTAGTAGTACCCGTGGAAGCACAATCAAAGAAGATATAACAAACACTCGCAAGCAGCAACAACCAAAGATTCGTCAGAATTCAGATAGAGAGGCGTTCATCAATATTTCATATTTCCATTCAAGGCTCATCCATTGTCTGTATTGCAGGTGGCGTGACGGTCGGAGCGGAGGAGCCGCTGTCTGTCCTCTCGCGGATCTCCCTGTACTCTTGACATATAGCACACAGGTGACAGAATAAGTGCGTTGTTAAATCGCCACATGGTGCTTCCGGAAGATTGTATTTTGCTCTTAGTGCTTGTCGATATCCACAAGCATAACAAGCAACAGCAGATCCTGGAACTGCCAATACAAGGCCCCCAGTAAACACACAGCAGAGACTTGTGAGAAGGCCCCAAAGCATGCAATGTGTAGTGCATGATCCAGCAAGAGTTCCAGATCCCAAGAACTGTGCATTCCTTCCAAAAAGGAAGCAAGGACAAGTTGCACCAATAAAACAGCTCTGTGGATCATCAAAACAAGCACAGATGCCTGAAGACCATTGTGTAGGATCCCGGGTTAACTTGTGGCGCGCGGCATCATTCTCCTCCGCAGAAACGCGATCCTCCTCAGTATCCAGGCCATATAATGGAATGTACTGAGGCGGAACGTAGCTCCCTTTTCCGGCCATCTCTTCGATTCGATTCGAACAAAGCCAAGACGGAGGCCGGCGCGGTGGAACGAGGTCGCGGCCGCGTCGCCTCTCCCCCCCCAAACCTGCTCGCTCGCTGCTGGCCGTGCGCGCGCGAGGTTGCCCGCCGCGCAAGGGAAGATGGCTAGGGCGGGGGGTGGGAGACGGAGGGAGGGGGTGGGCGTACACAGAACCCGCGCGGCTCCGGCGAGGTCGCCGGCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.23422
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0013100.1 1 9173788 T A
Osa01LNT0013100.1 1 9174669 A G
Osa01LNT0013100.1 1 9175241 A G
Osa01LNT0013100.1 1 9175509 T C
Osa01LNT0013100.1 1 9175738 A G
Osa01LNT0013100.1 1 9173952 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0013100.1 osa-miR5532 Translation 4.0 11.159 1 22
Osa01LNT0013100.1 osa-miR159d Cleavage 5.0 13.05 1 21
Osa01LNT0013100.1 osa-miR444d.3 Cleavage 3.0 12.4 1 21
Osa01LNT0013100.1 osa-miR1847.1 Cleavage 2.5 11.683 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0013100.1 1 An9 Morphological trait Panicle/flower nan nan
Osa01LNT0013100.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0013100.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0013100.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0013100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0013100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0013100.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0013100.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus