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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0154400.1

GGATTTATAAAAATCAAATATCTTAGATGGTGGTATTACATTGCAAACCAAAAGAATACAATGGATTTATCAAACAGCAAGATTACATCAATGAAGAAACACATAGGAGCAAATAATTTAGCCAGGAAACACCTCTTGAACTAGTAGTGATAATCATTTGCCTTCTTGAAGATCTCAGCCTGGGAAGAAGCAGCGCCATCAGAGGTCATGGCCACGACGATGCAATCCTTAACCTGTTGGGTGGTAAAAGGGAATTTCTTGTTCACAATGGAGTTGAGGTATGCAGCTGCTCCCTCGCGGAGCAGAGCACCAGTACCATCAGTTCCAGTGTTTGAAAGTGCATCATGAAGATTTTCTAGCTTCTTGCCAGTGATCAAACTGCAAGCAGTACCGAGTGTCTTGCCAATGTCGCCAAGGGACCCAATAGCTGAGATGATAACATCTGGATGGTTCTTCCAGTAATCGCAGGATCCACAGAAATCATGCTTTGTCGGAACTTCAGGGACATCAGGTGTGCTGGGGGTGCTTGGTGTCGTGCCGTAAGATGGTGTTGGTGTAGTGCCGTAAGATGGTGTTGGTGTAGTGCCATAAGATGGTGTTGGTGTAGAGCCGTAAGCTGGTGTTGGGGTTGGTGTTGGTTTGTAACCACCATCTGATCCATATGATGGAGTTGGGGAGCCACCATACTGAGTAGTAGAAGAGTAGGTCTTCTGTTCAGACAACTCTCCCAGGCTCCTGCATGAGCTCAGAGAAAGGAGCCCCACCAGGACACCACTGATCAGAAGAACCTTGCTACTCATCTTGGCTCTCAGTATCTGCAGAGAAGACAGAATGGATGACTGAACTGGTTGAGGTGCT

Coding Potentia
Explanation CPC Score
noncoding -1.22291
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0154400.1 2 7324159 C G
Osa02LNT0154400.1 2 7324736 T C
Osa02LNT0154400.1 2 7325096 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0154400.1 osa-miR172a Translation 4.5 22.278 1 21
Osa02LNT0154400.1 osa-miR172b Translation 5.0 22.278 1 21
Osa02LNT0154400.1 osa-miR172d-3p Translation 4.5 22.278 1 21
Osa02LNT0154400.1 osa-miR1437a Translation 4.5 22.279 1 22
Osa02LNT0154400.1 osa-miR2876-5p Translation 5.0 19.006 1 21
Osa02LNT0154400.1 osa-miR5500 Translation 3.5 7.588 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0154400.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0154400.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0154400.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0154400.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus