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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0154500.1

AGCGGTACTGGAAGGTATAAAATACCCCAAGCTTGTTTCCTAAACACAGCAAATAGTTTTTCCATCTTCTGAAAAATGTTAGCATTCACAAGATACAGAAATACCGGTACTATGCTAGAGACCAGCGAGAGCATTCAACGAGATCAGGCATCGCAATGTGGCTTTGCCCCCACAAATAAAACGGAAATCTAACACCAACTTGGTGCCAGATTATATCAGTGTGTGCATATGCCTTCAATCCTCTTCAATTGGGGTGCTTTCTTCATTTTGCTTCTTCTCATCCGCCCCATTTTCTTGGTTCTGACCATCTGTCTCCATCTTTTCAGTTTCCTCTGAAGCATCAGCCATATTAGCATCTGGCTTGGGGATTGCAAATTCAGCAGGAATTTGGCCAGTGCTCAGTGCCTTTTCAAGCCTTGCAACCTCCTCAAGTGTCTGAGAATTCACAATGGCAGCCTTGATAGCTGTGATTTGCTCAGGTGTTGGAGCAACTACTTTTGGACCCTGCTCCTCCATTGTGGTATCTTGAGCATCCACCACCTGTCCAGGAGTAAAAGTTTTGGCTGGCACCTTCTTTGCCTCTTCCTCTGCCTCCTTTGAGTGAAACTTCTGTGCTGCTGCAATTCTCTCCTACAAAAACAAAAGATCTCACGCATAACTTCAGAAATTAACACAAATACATGCACACTAGATAATATTAAAAATAACACGTAAACTAAAAGGCATTCATGTATTTAATTCATTGCGACACAAAGTTAAAGAGTCGCTCTTTTGCCCTTTTTCCTGCCAGCACTTCTGCAGTCCATTCCAAAATCATTTTGGCAGTCATTCCAAAGGAAATGAATGAACAACCTGTTGTTTCACTTTCTTGAAATCCAGCAACCGCAAATGCTTCAATTTATGGATCACATACAACCGGTAGTCTGGCTGCTTGGTTACAGTATTATCAAGTAAGCTAAGAAACTGAAGCTTTGGAAGAGATGCCAGGGGATCGATCTCCGCAAGATTTGTAAGACGATTGTTTGTAAGCACCAATGTATGTAACTTTGGCAAGAACTCACCAAGATTGGGATTGATACGTGTGATTCTGTTATTGTTAACTAACAGAGTGCCAAGACGATTCAAGTACGGGAAGTTCTCAAGCTTGACAATCTCATTGTCTGACAAGTCAATTGTGTCAAATTGGTCCTCGGTGGCGCCCAGATTCTCGATGATGGGGATCTTGTTACCTCGGATGTCGAGCTCGCGGTCCTTGACGGCGTTGAAGAAGTGCGGGCTCTTCCATATCAGGTCGGCGGTGAGCCTCACCATGGCGCGGCCGGGAGGGCGGGCGGCGGCAACAGCTTCGGGTCAGTCGGGCTACAAACTCCCCCGCGGCGCGAGGTCGAAACCCTAGTGATGACGAGGAGGGGAAGGAACGGCAAGGCGGCCGGAGCCCTAGCAAACGGGAAGGCGGCGAGGGGAGGAGGTGGAGGAGGGCGGCCGCATGCTCGCTCGGGATGGCGAGGCGGCGGCAGCGGCGGCAAAGGAGAT

Coding Potentia
Explanation CPC Score
noncoding -1.13474
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0154500.1 2 7633985 A G
Osa02LNT0154500.1 2 7633687 A G
Osa02LNT0154500.1 2 7631231 T C
Osa02LNT0154500.1 2 7633370 C T
Osa02LNT0154500.1 2 7633393 C T
Osa02LNT0154500.1 2 7634205 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0154500.1 osa-miR5836 Cleavage 4.0 18.946 1 21
Osa02LNT0154500.1 osa-miR815a Cleavage 4.5 15.519 1 21
Osa02LNT0154500.1 osa-miR815a Cleavage 5.0 17.828 1 21
Osa02LNT0154500.1 osa-miR815b Cleavage 4.5 15.519 1 21
Osa02LNT0154500.1 osa-miR815b Cleavage 5.0 17.828 1 21
Osa02LNT0154500.1 osa-miR815c Cleavage 4.5 15.519 1 21
Osa02LNT0154500.1 osa-miR815c Cleavage 5.0 17.828 1 21
Osa02LNT0154500.1 osa-miR5500 Translation 5.0 16.326 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0154500.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0154500.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0154500.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0154500.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0154500.1 2 qEML-2 Morphological trait Seed R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus