>Osa02LNT0155200.1

ACACAATACAATGCCATGCAGCAAGTCTAAGGTTTCATCACACACGACTCAAAATGTCTCCATCCACTGAGAAGCGAGCACACACAATGGTGACGATCCAAGTCCTCCGCTACCAAACCACGACAGATGCTAGCATTACAAGTTTTACAACAAGCCCAAAAGGGTTTTTACTTAAACTGGTCCGGTCTGACCAACAAGAAGCTAGAGAGGATGTAGCACAGCGTGCGCAGTGTTCTTCTGTTAGTCACTGCGGGCAGGAGACCCGTCGGCAGACCTGGAGCGGGATCCTGGAGGCGATCCTGAGGATTGCCTGGGGGACCTCCGGTGCGGAGGGGATCCATCGCTGTCAGCTGGCGGCGACCTCTTTTCATAACCATTATCAGCATCACGCCGGTCCCCATCTTTATTGGCAGGAGAATAGGATCTCCGCTTCTTGTCTACTTCATGTTCTTTTGGCTGACGCCTAGGAGATTTTGCACGATGTGTGTCTTTTCTCTGTGGGGATGCGGAATAGTCATCTCGTCGTCTTGGAGCAGGAGAGTATGACCTTGACCGTGGACGACCACGATAACGGGGAGAGCGGGAACGCGAACGTGAACGAGACCTCCCGTAATGGGATGAACGACGGCCTTCATGGTCAGAGTACCCTCTGACTCTGGCTCTACTGCGCATCTCTTCTGGCCTTTTCCGTGACTCAGCAGCAAGAACAACAGTTATCTCCCGGCCAAAAACCACCTGACGATTCATATGATATTGGGCCTCAGAAGCATCATAAGGGTCAACAAACTCCACGAATGCAAACCCTCGCGGTTCCCTGTATATGTATATTTTATGAGACAGTTGTTTGAGGAAAATTGATGGTAAAACTAACAAATAAGAAGGTGCAAAATGTTCATGTGTAGTGTGTGTCTGCCATGTTACCATCACAGTTCAAAACTCAATGTACCCTCTATGATTCTCAGTGAAGCACAGTTAAAAACTTACGAACATTTCCAGCAAAAGGGAAGCAAGTGTTGCAAAAAGCAGTTAGATGTCCAGGCTCTATTATCTGAATTTCTTGTATAACACTACGTATGGTGATCCTCATAAAGAGCATCTTCACAGAAGCATTCGCTTCAAGTTCCCGAATGTGCGAAAAGTCAAGATAGAACTTGAAATCAACTTCTCTCACTTTTATCTTCGCATGCACCACCCAGTACAACTCTCTTATCTTCTCTTCGTGAAATTAATTTTCTCAATGAGTCAAATCTTGTCTTCATAGAAGAACTTCTTCATTCGGACAAGACTCTATCTTGCCAAACAAATCAATTGTTAGGAATATTGAAAAGCATTCTTCAACATCGTATTTACTTCAATCCAGTACGACCCTGGGAATAGTTTCAGGGAAAAACTTCTTATGATATTAAGTGCGTAGGAGAAAGAAAGCAAAAATATGGGTTACCACATTAGTGAATTACATGCTCTAGTGACATGAAAAAAATTACTAAACACATCATCAGATTAAAAAAATGATTCAAGCATTTCAATTAATGGAGCTAAATGAAAAGGTGACTGCAGTAATTGATACCACACTGAAGCTGGAAAATGTTCACGCCAAACCTCCGTTGTGATTTTTTTTATTTCCAGTCTATTGAATAACTTTAGAAAAGCTTGTAAGCTTATTGCAGCGACAATACAGAGAAGCATACAGACTATCTACATTTACTATCCTAACATTATAACAAACATTTTTTTGGCGATTGCCAATCAACAAACCAATCAACAGAGTCATTAGCAACACTTTACCCGGTATAATAATCCTTTGGCAGGTAAACATCTCGAACAGGTCCAAACCTTTCAAAAGGAACTCTAAGATCCTCCGCTCTGCAGCTTAAAGGGATGTTGCGGACCAGGAGACTGCCAGAACCCTGTTCCTTCCGTCCTCCATATCCCCTCCTAGGGGGACTTCTTCCTCTGCCACCATATCCCCTCCTTGGTGGACTGCGATAAGGTGGACTATACCTCCTCATTGTTTTGTCGGGTGAGTACGCTTGCCGCCGGCGAGGCTCCGTCGCTGCCGCTGCCGCTGCCGCCGCCGCCGACGCGGGGGTGGGGAGGGTAGGCGAGTTGGCGAGGGAGAAAGCGAGGCGACCGC

Explanation	CPC Score
noncoding	-1.18995

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0155200.1	2	8555421	T	C
Osa02LNT0155200.1	2	8555916	T	C
Osa02LNT0155200.1	2	8554316	A	G
Osa02LNT0155200.1	2	8554478	T	C
Osa02LNT0155200.1	2	8554512	T	C
Osa02LNT0155200.1	2	8554726	A	G
Osa02LNT0155200.1	2	8554735	A	G
Osa02LNT0155200.1	2	8555984	G	A
Osa02LNT0155200.1	2	8556426	A	T
Osa02LNT0155200.1	2	8556790	T	C
Osa02LNT0155200.1	2	8558023	G	A
Osa02LNT0155200.1	2	8557696	C	T
Osa02LNT0155200.1	2	8556945	A	G
Osa02LNT0155200.1	2	8557436	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0155200.1	osa-miR399a	Translation	4.5	9.735	1	21
Osa02LNT0155200.1	osa-miR399b	Translation	4.5	9.735	1	21
Osa02LNT0155200.1	osa-miR399c	Translation	4.5	9.735	1	21
Osa02LNT0155200.1	osa-miR169f.2	Cleavage	3.0	14.103	1	21
Osa02LNT0155200.1	osa-miR437	Cleavage	4.5	13.022	1	21
Osa02LNT0155200.1	osa-miR390-5p	Cleavage	5.0	20.159	1	21
Osa02LNT0155200.1	osa-miR1857-3p	Cleavage	4.5	18.752	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0155200.1	2	qMXA-2-1	Morphological trait	Root	OSR9A	RM71
Osa02LNT0155200.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0155200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0155200.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0155200.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712
Osa02LNT0155200.1	2	qLRS-2	Resistance or Tolerance	Drought tolerance	RM322	RM324

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus