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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0155300.1

AAGATCAAATGTAAAATATGTTATGGGAGGAATAAAATCATATCAACAACCCACACAAGCATACATAGATGCGACGTGAAGGGCACATCAAAGACTCCATACATTTAAGCTCTAAAACAAAATGGATTACAAAATATTAGGACATGACATGAGGGGATACATATACTATTCAGGTGAAAAAAAAAAAGAGCTGCCGACGAAGCTGCACTACATATCCAAGAAGTATTGTCACGCGTAGCGGCGAAAATGGCTTGTGATCTCGGCCATCAGCTGAGGAGATGGTCTACCAGAAGTTGGAATGGCTAGAAAATCTCTTGCAATCCTGGCTACCGTGGGATACCTGCCACAGTTGTTCTTCCACCACTTGAGAATATCGAAATCCACTTGATCCAGAGGGACGGTTTCATCTTGCAGATAGGCTTCGAGTTCTCTCATGTGTTCCTGTGAACTCGTATTGCCCTGCTCTGTGAGTTGCAAAGTACTCCCATTCCCTTGTATTGATGGATCCACATCCATTTCATGGATATGATTAGCATGCTCTGTGGCATTGCTCTCATTATTGTAATCTGTTTCAATGCCTTGTGTTTTGTACTCTGTGAAGAGCTCACGAAATTTTTCTCCTACCTTAGAAACTAGATCTACAGAGGGAGCATTCTTAAGAATGCTCTGAAAATTCTTGAGTAAGTTTTCAACATAGACGAGCTTATATCTCGGATCTAGAATAAGTGGTATGCTTAGTAACAAATATGACTTTAACAGAAAGCGGTCAAGTGTGCTCATTGCGTTCTGAACAGATATTAAAAGAACATGTTCATCCTTGAAACAATCAGTTAGTTCACCACTGGAATTTTGCATCCTTCCTGAACAATTGTTGAATCCGAGTACTAACGTGTTTCTCACTTCCAGCATCTCTATGAGGACCAAATTTGAAGTAGGCAAGCTGGAGGTTGACATCGTTTTGATGGCATGGTATATCCTTCCTAGCGTAGTGCGTAACACTTCTGTAATCCATGTCTCATGGAACATGACTTTGCCTGCTAAGGCTCTAATTTTTGCTGGTCCGGAAGAGCATTCCTTGTGAATAATTTGTAGCGCATAATAATGTGCATACCACCACTCGTCGTATGTCCAAGGGTGATCTAGCTGCAAATGCGAAGAAATTTCTCTGCGTTTCTTCTTCAAATTTTCATCTTCAAAGGCGTCGAGGCAATCTTGTCCGTAACAACTGAATGGATGTAGATTCGAAGCAATATCAGGTAAATCCCACCGTAAATTGGTAGCACAGAGCAGCTCATGTTGGGTTGCAGATAGATGTGGTAGATCATTATCATCGTAAATTATTTTTCCAAATTTTGTCGTACCAAAATTTTCTATTAGAACGCCACTAAGCTTAGACAAAAGGCCCCAATGAGAAATAATTCCCAACATACGCTCATAGTCCTCCGGCTCCCAATCTGTAACTGGGATGTCTATGATGTAATCTTTGATATCCAATATCTTACTGAGACCATAGGTGGTGTCATCTTCCACTTCTAATGCCTTAAACACCTGTATAACTCTGCAATGGAAATTCCACTCTTCATCAATGAAGTGGGCAGCCAAATACGCAACTTTCCCCCAGGCAGTTGTGGTTTTTCCTAATGATAAGCTAGCAAGCCCAGGCGTACGCCCAATAGCATCCTTCAAGCTGCTCATTTCTCGGTCGAAGAGCTCATCGCACCTCTTCCGGACATCGTCTCGCGACGGCATCTTGAAGTCAGGGCAGAGCATCCGAACAAATCTTGTGAACTCCACGTCTTCCACCATGGAGGAAGGGAACCCGTGCAGCGCGATCATCCTGATGAGCTGATCTTCAGCAGCAGCAGCAGCCGCTGTTTGCTCACCCAAATCATCAGAGCTCGATCTTGAGAACGCCGATGCACCATGATGAGAGCCCTGCTGCCTGCCACGCTTCCGGCAGGATTCCTGGTAGTGCCTGTTGAGACGCGAGGTGCCATTCTTGTAGCTGAGCAAGTTATGGCAGTGCCTGCACTCTGCCATGTTGTCAGCCTTCTTCTCAAAGTGAGCCCAACACTCTGACCCCATGCCCACTGATGAGAAGGCTGATCGATGGAGGGATGCTCCCTGCCACTTTCCTGAGCCTCTCTCTCGATCGATCCGGCTGCTGCCTGCTGCTGTTGCTCGGCTGCTTCTTCTCCAACTTCTTCGCCTAGTAGGAGTATACGAAGAGAGCGAGACGGTCAAAATGG

Coding Potentia
Explanation CPC Score
noncoding -1.18598
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0155300.1 2 8701912 T C
Osa02LNT0155300.1 2 8701915 C T
Osa02LNT0155300.1 2 8701535 C T
Osa02LNT0155300.1 2 8700546 T A
Osa02LNT0155300.1 2 8700625 T C
Osa02LNT0155300.1 2 8700662 A C
Osa02LNT0155300.1 2 8700676 G A
Osa02LNT0155300.1 2 8700718 T C
Osa02LNT0155300.1 2 8700860 C T
Osa02LNT0155300.1 2 8701112 A T
Osa02LNT0155300.1 2 8701195 T G
Osa02LNT0155300.1 2 8701297 C A
Osa02LNT0155300.1 2 8701666 A G
Osa02LNT0155300.1 2 8701534 A G
Osa02LNT0155300.1 2 8701671 G T
Osa02LNT0155300.1 2 8701674 C G
Osa02LNT0155300.1 2 8701699 A G
Osa02LNT0155300.1 2 8701784 C T
Osa02LNT0155300.1 2 8701860 T C
Osa02LNT0155300.1 2 8701875 A G
Osa02LNT0155300.1 2 8701877 A C
Osa02LNT0155300.1 2 8701941 A T
Osa02LNT0155300.1 2 8701980 C T
Osa02LNT0155300.1 2 8702449 T G
Osa02LNT0155300.1 2 8703045 A T
Osa02LNT0155300.1 2 8701633 T C
Osa02LNT0155300.1 2 8701900 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0155300.1 osa-miR812t Cleavage 5.0 14.368 1 24
Osa02LNT0155300.1 osa-miR812u Cleavage 5.0 14.368 1 24
Osa02LNT0155300.1 osa-miR1425-3p Translation 4.5 17.399 1 21
Osa02LNT0155300.1 osa-miR1439 Translation 4.0 13.686 1 21
Osa02LNT0155300.1 osa-miR2907a Cleavage 4.5 22.006 1 22
Osa02LNT0155300.1 osa-miR2907b Cleavage 4.5 22.006 1 22
Osa02LNT0155300.1 osa-miR2907c Cleavage 4.5 22.006 1 22
Osa02LNT0155300.1 osa-miR2907d Cleavage 4.5 22.006 1 22
Osa02LNT0155300.1 osa-miR812n-3p Cleavage 5.0 14.368 1 24
Osa02LNT0155300.1 osa-miR5071 Translation 4.5 14.049 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0155300.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0155300.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0155300.1 2 qMXA-2-1 Morphological trait Root OSR9A RM71
Osa02LNT0155300.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0155300.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0155300.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus