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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0155400.1

CAGATCCTCATCTCTCCTTTTTTATTATTAAGCCTCACTCATTTCAACAGTCTACAATATGGATTACAAGCCGTAAGCCTCGGTGATGCGTTGGTCGTAATGCAGTCCACTGCTTAATGCAATCGCTACATGCTACTGTATTTAATAATAATACAATACTAGGTCAAGTCCAACGCTGTAAGGTGAAGGAATGGTTTCTTGATTATCCAATGATGTGAGCAGGCAAAAACCCTGATCTAGGAAGCAGTAAGAATTTCACTGTTCGGCATAATGTTCATCTTCAGAGGCTCGGCCGTTGTTTCTTCTTGTTGTTCCCTTTCAACGGTAGTACAATACGCCTCTAGCTCTCTCCTTGCAAAGGTTGGGAGAACAAATGCGGCTCTATGCATCTCTGAATTATAAAATCTAATATCCCTTCCTGCTTCCATAGCTCCTTCTAGTTTTTCAATTGGATTTGCAGGAGTCAGGAAGTTGACTGGTGGACCTTCTTTGGCACATAGCAGAAACCCAATCACACCACTGGGATATGTCGGGACACTCGTCCAGGCATAGTGGACAGAACCCTTGAATGTCTCACGGCAGATCGAAAGCATGTCCTGGATAAGATGCGTATGCAACCACATGCTCTCAGCCTGATTACAAAGAACACCACCAGGCCTCAAAGCTCTTGCGATTGTGTCAAAAAATGGCTTCTCCACAAGTTCCTGGGCAGGCCCAATCGGGTCTGATGAATCGACAATAATAGCATCATATGTCCCTTCAGGAGCATTCCTTAAGAACTCCACAGCATCACCAACATGAAGCCGAACACGAGGATCTTTGAATCCAACAGATAAATCTGGGAAGAAATCTTTACAAACATCAATAACTAGCTGATCAATTTCACATATATCAATTGACTCCACAGAACCATGTCTACATATCTCCCGAAGGACTCCACCATCACCACCTCCAATAACCAAAACTTTCTTTGGGGATGGAATTGAGCAAAGCGGAAGGTGAGTAATCATTTCCTGGTACGCACATTCATCCTTATCAGTCAACTGGACAATACCATCAAGGACAAGAACTTTTCCATAGGTTGAGGACTCAAAAACTAAAACTTCTTGGTATGGTGACTTCCCCTGATACAAGATCTTCTCAACTTTCAGTGAATGGGCCTCTCCTGGCCACATCGGGTTATTGTAATACTGCACTTTGCTCGTTTTACCGCCGCGCGAGCGGGGCTCGGTGAACCATCCGGACACCACGGTGGCGTGGCACTTGGCCTCGGATTCAGGCGCCGCCGCCCTGGCCTTGACGCAGCAAGGGGGCAGCGGCTTCCCGTTCCCGGCGGAGCCACCACCACCACCAGCAGCAGCATCACCCCCACTCCCCCCTGTCCGCGCCGCCCCGGTCGTCGAGCCATTTCTTGCGCCTCCACCCTCCATGGATCCTGCTCCTCCTCGAAGTTCCCAGCCTCTGGGGCGCGGTGGCGAGCGGCGAGGCGGGGGGGTGCGGGGAGAGGAGGCGCCGCCGCGAGGGCATAAATAGAGCTCCTCCTCCGGTGGCGGTGGTGGCTT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.956058
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0155400.1 2 8727353 T C
Osa02LNT0155400.1 2 8727718 C T
Osa02LNT0155400.1 2 8728221 C T
Osa02LNT0155400.1 2 8728575 A G
Osa02LNT0155400.1 2 8730276 T C
Osa02LNT0155400.1 2 8727917 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0155400.1 osa-miR5792 Translation 5.0 18.773 1 24
Osa02LNT0155400.1 osa-miR399e Cleavage 4.0 24.379 1 21
Osa02LNT0155400.1 osa-miR399f Cleavage 4.0 24.379 1 21
Osa02LNT0155400.1 osa-miR399g Cleavage 4.0 24.379 1 21
Osa02LNT0155400.1 osa-miR399i Cleavage 4.5 24.379 1 21
Osa02LNT0155400.1 osa-miR164c Cleavage 4.5 16.15 1 21
Osa02LNT0155400.1 osa-miR444b.2 Translation 4.5 19.567 1 21
Osa02LNT0155400.1 osa-miR444c.2 Translation 4.5 19.567 1 21
Osa02LNT0155400.1 osa-miR5152-3p Cleavage 5.0 18.291 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0155400.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0155400.1 2 qMXA-2-1 Morphological trait Root OSR9A RM71
Osa02LNT0155400.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0155400.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0155400.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0155400.1 2 qEML-2 Morphological trait Seed R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus