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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0155800.1

GCCGTAAAAGAATAATTAGTTACACATTAGCATTGATTTATGAGGAGCATACATCATACAACAGTTACAACTTTCTCGTACAAGTAGCGAAAAGTACAGATGCTTTAACTTTCAACTGCATGAGGTTTTGTAACTGCTACTATTTCACAAGTATAGTAACATTTTTATATCTTGTACAAACTGTATGTATTGCCGTTTGAAGTTTTGAGTTCCTCAGTTTACCATCATATCAAGGTAAGATCATGTAATCTTTGTTTTGTTTTATCATGTTGATAGTTCATCGCAGTCATCGTATGGAGGAGCCAAGGTACTTTCAGCTGGTAAAACTGATCTCAGCCACCAATGTGAATCATAGGTCTATTTGCCGTCTTAGCAATATCAAACATCCCAGCATGTTTAGCTTTCTTCCTTTTAACCGCAGCGCTTATTATTTCTCTGAGTCCAGCATCATCAACACCAGCTCGAATAGGCTCTCTCAGGCTCACCTCTGAGGGGCCAAATAAGCACACTTTCAAGTTGCCATCAGCCAATAGTCGTAATCTATTGCAACCAGCACAAAAATGCTCTGTCATCGATGTAATAAACGAAATTGTTCCAGCATGACCATCAATCTTGAAATTCTTTGCGGTCTCTGACGGATGATCTTGAAGTCTCTCTACACCTTTAAAACGTTGGCGCTTACCACTTTATCCATCATCTCTGCATAAGGAACCAACTTCTTGACATTCCAAACATTACCATCAAACGGCATAAACTCTATAAATCTGACATTGACAGGCTTGTCTCTCGTCATTTCAACAAAATCACAGATCTCGTCATCATTCATTCCACGCATGACAACGCAGTTGACCTTGACAGATTGGAATCCAAGTTGTATAGAAGCATCTATCGATTCCATGACTCTCGAGTGCCCTTTACGTCTTGTCATGAACTCAAACTTTGCAGGGACCAACGTGTCCAAGCTAATATTTAGAGCATTGAGCCCACATTCTTTCAACCTTGGGAGCTTCTTAGAAAGAACGAGCCCATTCGTGGTCATCGCAAGAGTTTTCAGCCCCTTCAAGCCGGAAAGATGCAAACAGATATCCTCGATATCCTTTCTAATGGTTGGTTCTCCGCCGGTCAACCGGATCTTATCCACACCAGAAGTAACGAACAGGCCGGCAACTCGGATTATCTCATCATGCGACAGGAGCTCTGAGTTTGGCGTGAGCTGAACTCCTTGGGCAGGCATGCAGTACTGGCATCTCAGATTACAGCGCTCGGTCAAGGAGATCCTCAGGTAGTTGTGGAATCTCCCGAACGAATCGACAAGCATGTCTGACAGTGGCGCCTCACTCAGTGCTACCTCTGGCACATTAGCACAAGAAGAAGTTGCATATAACCTTTGACTATCATCAGTAGCTTTGGATAACGGGCAAGTGCTCATCAAACATCGGAGCCCCACTCTCATTGCATCAACCGCGCGATCAGGCCGGCGGCGGGCCAGCTCGGAGAGGCAACGCAGCGGCATCATCATCATCTGACAGACTATCTATCCCCTCTCCTCCTCCTCGTAGTAATCCCAGGAAGCAAACTTTTTGGGGGAACAAACAAACTTTTACACAGGTTAATTAAGAGGAGAGCTTCTTCCAGATCTCACCAGGATGCCCTCCCCTCCCGGCTCCCCTGCTCTGCTCGCCTCGACAAATGGAGATCGGCGCCGCCGACTCGCAGAGGAGAGGGAGCACGTGAAGGCGGCGGCGGCGGCGAAGGATGAAGAGGCGGAGTTGCCTTCC

Coding Potentia
Explanation CPC Score
noncoding -1.07675
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0155800.1 2 8977268 A G
Osa02LNT0155800.1 2 8977390 T C
Osa02LNT0155800.1 2 8977441 G A
Osa02LNT0155800.1 2 8978245 T G
Osa02LNT0155800.1 2 8978824 C T
Osa02LNT0155800.1 2 8980702 A G
Osa02LNT0155800.1 2 8978321 G A
Osa02LNT0155800.1 2 8978325 T G
Osa02LNT0155800.1 2 8979563 A G
Osa02LNT0155800.1 2 8980030 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0155800.1 osa-miR166i-5p Cleavage 4.5 13.293 1 21
Osa02LNT0155800.1 osa-miR419 Translation 4.0 8.77 1 21
Osa02LNT0155800.1 osa-miR1860-3p Translation 5.0 20.269 1 22
Osa02LNT0155800.1 osa-miR2919 Cleavage 3.5 20.002 1 19
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0155800.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0155800.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0155800.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0155800.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0155800.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus