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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0155900.1

AGCATCAGTAGTCACAAAAACTGTATAAAGTTACACAAACCAAAGCTAAAACATCCGTATCGTGGTAAAATGCTCTCTCTTTTTTTAAGCACAGTGAAAATAATACAGTTGGCTAGGATACACAATATCAGAATGAACAAAACAGATGGTGGAATAAACAAAGGATGGAACAACTGGATGACTGGCAGCACTCGAACACATGAACAAAGCAAATTTTGTTCAAAAACTGTTCTTCCAGACAAGAAAAGGTAGCACTCGTATTCTAATGTACTACCAGTTGTTTGTAACTACAGAACTTACAATTGCTCTTAAGCTGGAACATACTCAAGTATCGGGTCAGCAGGGAAGTCCTCGTATCCACTTATGCCGGTAATTCTTAACCTTGTGTTTGGCTGTCTGTGACCAAGTTTCCTCTGGTACTTCTTCTTCTTCTTATATTTGAAGACTATCACTTTATCATCCCGTCCCTGTTCCTCAACCACTGCATGAACAGCAGCATTGGTCACCACTGGCATGCCAATGTAAGCCTTGTCTCTAGTTGATACCAGTAATACCTTGTTTAATATTATCTGATCATTGACATTGGCGCCTTTCAGCCTCTGCGTGTATATATACCTTCCAGGCATCACAATGTACTGTCTCGACCCAATCTGCGACAGAAGAAAAATAATCAAAATAGCTCCCTCGTTATTATTCACAGCGCTCATACAAAACAAAACACAGAGAAACCCTCCTCAGATGCACTCCTGCATATTTCAGAAATGCATCCGAACAATTCTCTGTAAGACTAGTATTGTATCATTCGAAAACACTGTAATTCTCTGCGCCGTTTTCTTAATGGTGTGTCCTGTACATACTAATAATCGGCGTGCGCGCATTCCTATTGGCGCGTGAATCCTAAGCTTCTTATGCAGCATAGAGTAAGCAACACAAGCCTGAAATCAAATGCTCACTTCACCGCAAGAAGCAACGCAACTAGCGCCAAATGCCTGTGTAATGATATTATTTAAAGAATTCGAGGTAATGTAGCATGAACAAATGTGATTCTTTTTTTGTTTGTTTGCAGTGAGCCGAGCAGGACTAAATCTGAAATATTGGCGGCAAGGGCAAGCTAGCCCCACCATGACAACGGCGAAGATGTCGGCGTCCTTCCCGGCGCCCGCGGCTGCGATCTGCGCCTCCACAGGCTCCGGCACCGCAGCCTCCTCTTCTTCAACCTCCTCCTCCTCTACCACCTCCGCCTCGGCCTCGGCCTCCACGGGTGCGGGCGCCGGCTCCTCGGCGGAAGCGAGGAGCCGCCAGCAGCGGCGGGGCGCGGACGCGGCGACGGGGAGGGAGCATCGCGAGGCCGGGAGGGACGGGGCGGAGGGGAAGGCTAGGGTTTTGGAGGCGAGGAGGCGGAGGGGCAGCGTCGCGGTGGCCATGGCCGGCGCGCGGGGGGGAAGAGCAGTGTGGATGAGAGTGT

Coding Potentia
Explanation CPC Score
noncoding -1.2656
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0155900.1 2 9006301 T G
Osa02LNT0155900.1 2 9006337 A C
Osa02LNT0155900.1 2 9006342 G C
Osa02LNT0155900.1 2 9006345 A G
Osa02LNT0155900.1 2 9006861 A C
Osa02LNT0155900.1 2 9007028 C T
Osa02LNT0155900.1 2 9007247 G A
Osa02LNT0155900.1 2 9007389 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0155900.1 osa-miR5543 Translation 4.5 10.002 1 21
Osa02LNT0155900.1 osa-miR1440b Cleavage 5.0 17.17 1 21
Osa02LNT0155900.1 osa-miR399e Cleavage 5.0 12.948 1 21
Osa02LNT0155900.1 osa-miR399f Cleavage 5.0 12.948 1 21
Osa02LNT0155900.1 osa-miR399g Cleavage 5.0 12.948 1 21
Osa02LNT0155900.1 osa-miR399h Cleavage 4.5 12.948 1 21
Osa02LNT0155900.1 osa-miR167h-3p Translation 5.0 12.18 1 21
Osa02LNT0155900.1 osa-miR1876 Translation 3.5 17.164 1 24
Osa02LNT0155900.1 osa-miR2924 Cleavage 4.0 15.036 1 21
Osa02LNT0155900.1 osa-miR5075 Cleavage 4.5 16.503 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0155900.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0155900.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0155900.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0155900.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0155900.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus