>Osa02LNT0156000.1

ATCTGCAGTTCTTGTGTCTCACCAAAAGTTATGTTATGTGGAGGCACACATGTTGCGCAATTCCCAGCCTGTCAAACACACGGATTACATAATGCAATGTCACCTCAGCTTAATCACTCTGATGATCTTGACGATCTTTTATTATTAACTAATCTGAATACACGGCTCAAGCTTTTGCACAAGGACGAGAGCGAGGAAGAAAAGGAAGCTTGAGAAAATGGGATGATCTCTGAATCAAGCAAGAAGGGTAAAGGGTAACTAAAAACAAGGGCAGGGCTGGGCAGGACGGGGAAGGGTTTTCTGATGTGTTTTTTGGTCAGGCGTGCATCGTCGCCGTCTTCTTGAAGTCGATCTTGTCGACCTTGACCTCGCCGTCGATCAGCTCGTACACGTAGACGACCACGCGGAGGCCGTCGATGTCCATGAGCACGAAGCTCGGGTTCACGTCGTAGGTGATGCTGCTGTAGGCGCCCGTGGCGGAGCCGGGGTTGATGACCACTCCCCCCTCGTGCTTGTACGCCTTGAACTGGTGGGTGTGCCCTGTGACGAGGATGTCCACGTCCAGCTGCCGTTGGAGCATCGCCAGGGAGTCCAAATCGCCCCATGGAACAACCTGATGACCATGGCACAGCCCTAGCTTGAACTGACCAATAGTAAGTGTCTTAGTCTCTGGGTAACGAGCATCCTCATCATATTCACCTCTGGTTATATGGAGATCAGGACAAAGGCTTTTCAGGTAGTCATGAACTTCCTTGATGCAGAGGTTCCCCGTGCAGATGATGTGCTGGATCTTGCCCGGGACGAGCATGGACTTGAACTTGGCCGGCAGGTCGGCCGCCCGGTGCGGCACGTGCAGATCCCCGAGCGCGAGCACCAGCACCATCTCCTCCTCCTCCTCCTACTACTCCTCCCCTCCTTCCCCCGAACCGGAAACCCGCTCCTCTCGCCGCCTCAGTCCGCGCCCCTTCAAGCTCGCCGCGATCCGGCTCAAATCCCTAGCCCCCCACCGCCGCGCCCCCCGAGGTGAGTGAGAGGGGGGGAGAGCTCGATCGATCCT

Explanation	CPC Score
noncoding (weak)	-0.971631

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0156000.1	2	9459878	A	C
Osa02LNT0156000.1	2	9459879	G	A
Osa02LNT0156000.1	2	9459951	T	C
Osa02LNT0156000.1	2	9460566	A	G
Osa02LNT0156000.1	2	9460943	A	G
Osa02LNT0156000.1	2	9460958	C	G
Osa02LNT0156000.1	2	9461635	A	C
Osa02LNT0156000.1	2	9461708	A	G
Osa02LNT0156000.1	2	9462148	T	C
Osa02LNT0156000.1	2	9458913	T	C
Osa02LNT0156000.1	2	9459153	C	T
Osa02LNT0156000.1	2	9459424	T	C
Osa02LNT0156000.1	2	9462630	A	G
Osa02LNT0156000.1	2	9462491	C	T
Osa02LNT0156000.1	2	9462651	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0156000.1	osa-miR444b.1	Cleavage	4.5	14.783	1	21
Osa02LNT0156000.1	osa-miR444c.1	Cleavage	4.5	14.783	1	21
Osa02LNT0156000.1	osa-miR3980a-5p	Cleavage	4.5	20.644	1	21
Osa02LNT0156000.1	osa-miR3980b-5p	Cleavage	4.5	20.644	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0156000.1	2	qLRS-2	Resistance or Tolerance	Drought tolerance	RM322	RM324
Osa02LNT0156000.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0156000.1	2	qMRLd2	Resistance or Tolerance	Other soil stress tolerance	RZ324	R712
Osa02LNT0156000.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus