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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0156500.1

CACATTACTAAAAAATCATTTTTAATTTCACGCGGTTGAGTCGCATGTTTGCACCAAAAAGTCTGCGAAAATAGTGATTTTATCATGCGGGTGGAGCATCCGTATGCAAAAATCCAATTTATGCATACGGTGCTTATATCGATCACATACAAACATAAAAAAATAATAAAAAAGAAAATAGCAAAAAAAAACCAAACCCTAGACCCTAGCTCCGGTGCCCACCCACTTTTTCGCCGGCGCTAGCTGCCGGAGGCCGAGCCCACCGTCGCCCACGCCAGATCCGCCGCCGCCTGGTGCTGTGCCTCCCATTGTCGCCAAATCCGCTGCGTCGTTGCCAAATCCATGCAGGAGGGAGGCGGTGGAGCCACCCAGCGGTGGAGGAGGTGGAGCCCAAGGTCGTCGAACCGGCCGTTGCTCGCCACCGTGGTAGATCTGCCGTGCCGCAGCTGGATCCACGCGCGTGGGAGGCGAAGCGGCGGCCGGAACCGTGTAGGAAGGAGGCAGTGAAGGGGGAGGTGGAGTCGCCCGACGGTGGAGGAGGTGGCCGCGCCTCCCACTCGCTCGGTCCCGGCTGCCTCTTCGTCGGCAGCGGCGCCACCCGAGGGCGCCGAGCCGGCTACCGGCGGTGGAGGAAGTGGTTCACCTCCCGCGCGCCGCCTACCCGCCAGTCGCCGACACGGAGGAAGAGAGGGGAGGACAGGAGAGAGAGAGGGGAGATGATGGGTGAAAATAATGAGAGGAGGGGTGAAAATAATGTAAGGAGAGGAAGAGGGAGGAGAGGAGGTGAAAATTTTGAAGTGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.937149
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0156500.1 2 10126194 G A
Osa02LNT0156500.1 2 10126374 T C
Osa02LNT0156500.1 2 10126585 A G
Osa02LNT0156500.1 2 10126713 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0156500.1 osa-miR1427 Translation 5.0 24.267 1 21
Osa02LNT0156500.1 osa-miR2907a Cleavage 5.0 9.444 1 22
Osa02LNT0156500.1 osa-miR2907b Cleavage 5.0 9.444 1 22
Osa02LNT0156500.1 osa-miR2907c Cleavage 5.0 9.444 1 22
Osa02LNT0156500.1 osa-miR2907d Cleavage 5.0 9.444 1 22
Osa02LNT0156500.1 osa-miR2930 Cleavage 4.5 7.642 1 22
Osa02LNT0156500.1 osa-miR2275d Translation 5.0 6.171 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0156500.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0156500.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0156500.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus