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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0156600.1

AGCGAGGGAATCACTTATTTTATATATATATATATATATATAACCACATTTAGTACTCACCACATTAAACACAGTTATACAAGGTTCATATATATATAATTATAATGACGCATATGGAGGTAATTTAAACAAGTAACAATATGGAGGTCCAGTCGCTGTTGCTGATGATGCATCCAGGAAGGTGGTGGTCTTGCGTATATATGTAGCAAGTTTCCTGTAATAACATGAGCAGTACGTAACAGCAAGTTCAACGTCTCCATTCCTCCAAGGTTGGTGTTTCCACTCCGATATTCTTCATATCTATCATGTTTGATAAATGGATCTCCGGCTTAGCAGCAGCTGTTGCATCAATAATGACAGCAACTTTGTCGTAGTCCAGTGCTACAGCATCAAAGACTGTCTGTCGAATGCAATTTGGTGTTTGAACCCCAACAATAACCAAGTTCTTTATTCCAGAGGTCTTGAGGACAGAATCAAGGTGCGTTGCAAAGAAAGCACTGAACCTAGTCTTCACCAACTTGTAATCCCCATCTTTGATAGTAAGCCCATCAGCGAGCTCAGCACCTTTGGAACCTTCCACCCCTAGGCCCTTGCCACTAGAATAGAAGTGCCTGCGAAAAAGTTCAACGTCTCTCCCAGAAGGGTCATGCTCTCTGACCACCCAGACGATGAAGATACCACGCTGCCTCGCGACGGCGACTGCTGCGGTGACAGTGGGTAGAATGGCCTCACCGGCCAATAGCGCGGCGCTGCTTGTCGCCGGATCCACGAAATCCTTCTGCATATCGATGACGAGCATGGCCGTCTCACTCCACTCGTCGCCGGAGCCGGCCACCGGCGCCATGGATATCACCAAGATTCGCACGGCCGGACAGCTCGATCTACTCGATCGGGATTATATTAATCCTCTTGCGATGTAGTGTGTGACTGTGTGTACTAGCTAGCATATATAGCACTGCCTGATCATGGAGAGAAGAAAATGGCAGCACTGGCTGGGTCCTTTTTATGGTTGGAGAGGAGCATTTCTATAGGTATAGCAGCAGCAG

Coding Potentia
Explanation CPC Score
noncoding -1.08772
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0156600.1 2 10136693 C G
Osa02LNT0156600.1 2 10136711 A G
Osa02LNT0156600.1 2 10136910 A C
Osa02LNT0156600.1 2 10137690 A G
Osa02LNT0156600.1 2 10137987 A G
Osa02LNT0156600.1 2 10138103 T C
Osa02LNT0156600.1 2 10138357 C A
Osa02LNT0156600.1 2 10138799 T C
Osa02LNT0156600.1 2 10138851 G A
Osa02LNT0156600.1 2 10139104 A G
Osa02LNT0156600.1 2 10137760 T C
Osa02LNT0156600.1 2 10139218 G A
Osa02LNT0156600.1 2 10141562 A G
Osa02LNT0156600.1 2 10141664 A G
Osa02LNT0156600.1 2 10141679 G C
Osa02LNT0156600.1 2 10141750 A G
Osa02LNT0156600.1 2 10142211 A G
Osa02LNT0156600.1 2 10142481 T C
Osa02LNT0156600.1 2 10143062 G T
Osa02LNT0156600.1 2 10143504 T A
Osa02LNT0156600.1 2 10139125 A G
Osa02LNT0156600.1 2 10139163 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0156600.1 osa-miR5528 Cleavage 3.5 23.547 1 21
Osa02LNT0156600.1 osa-miR5801 Translation 4.0 20.463 1 24
Osa02LNT0156600.1 osa-miR171c-5p Translation 3.5 13.949 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0156600.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0156600.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0156600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus