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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0156700.1

CATCAACTTGTTCATTGCTTTGAACAGTTTATTTCCAGATTAAGCTTCAAAGTTGGAACAGATCAGGTAGCTAGGTCCTGTTATCTATTCATCTAAGCTATGTTTTGTACTCTTCCCGGTCGTCACGGGGACGAAACCTCATGCTCTGTTATTTATTCAGACACCAAAATTTCTTGGTCATGGAGTTCGAGCTCATTTACAGTGATTGCAACCAAGCAAGATTTATCTCTGGTCACTAGTCATTCAACAAACAGAACTGGCACCCGGTTTCTGAACAGGTTTACTCCAGTTCCTTTGCAAAGTCGATGTTGTCGACAAACACCGATTTCCAGCCATCAGGGTCCAGGATGGACGTGATCTTGGTGTTGATCCCCGGCAATGGCCCTGGCTCCCGCACCACCTGCCCTCCGAACAGCTTCACCACCTCCGCCGTCTTGTAGACGTCGTCGGTTCCGATCGCGATCTGGGCATATGCATTCCCCTTGTCATATTCAGTGACACCATAGTTGTATGTCAGCTCCAGCACAGCATTCTTGTCTTCAGGACCATACCCCATCATTGCCACTGTGTACTTGTATTCAGGGTTATCTCTCTTCCTTAGCAGCTCCATGCCACAGGCCTTCTCATAGAAGCTTATGGCCCGATCAAGATTACCGACACGGAGCATCACCTGGCACAGGGGCTCTGGAGTCCCTGGCCTCTCAAGGATCTCAAACTTGTAGCCATCTGGGTCCTCGACGAAGGCGATCACCGTCTTGCCGCCCTTGACAGGGCCGGGCTCCCTGGTCACCTTCCCTCCTTTCGCCCTTATCAGCTCCACCGTCTTCGCCACATCGTCGACGGCGATGCCAAAGTGACCGAAACCTGCCCCGATGTCATACTTGTCGACGCCATAGTTGTAGGTGAGCTCGACGACGAAGTGGTTGTCCTCCGCGCCATAGCCGAGGAAGGCGTTGGTGTACTTCTCCTCCGGGATGTCGCGCTTCCTCAGCAGCTTCATCCCAAGGCACTCCGTGTAGAACTTGATTGTTCTGTCGATGTCGCCGACGCGGTAGACGACGTGGAGCAGCCGCCGGTTGTCGCTCTTGGCCCAGGCGAAGGCCTCCTCCTTGCTGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.766445
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0156700.1 2 10378593 A C
Osa02LNT0156700.1 2 10378817 C T
Osa02LNT0156700.1 2 10378896 T G
Osa02LNT0156700.1 2 10379042 T C
Osa02LNT0156700.1 2 10379044 G A
Osa02LNT0156700.1 2 10379210 G A
Osa02LNT0156700.1 2 10379425 C T
Osa02LNT0156700.1 2 10379436 T G
Osa02LNT0156700.1 2 10379807 T A
Osa02LNT0156700.1 2 10380253 T C
Osa02LNT0156700.1 2 10378512 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0156700.1 osa-miR5823 Cleavage 4.5 20.137 1 24
Osa02LNT0156700.1 osa-miR2873a Translation 5.0 19.779 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0156700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0156700.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0156700.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus