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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0157500.1

GACGAGAAGAGAGCACACCATCAGTTTTATTTTATTAAGATAGCAGCGAGAGATGCATCAAGCATCAATCATGAAAGGTAGAGTAGCTACGATCAGGTGTTTGTAGGAAATACTCTCAATTGGCTAGCCACAGAACATAGCCCTGCGGCATGTAGTGGCAGATGGCGTCGCCACGGCTTGCCTTGAGGAGCTCGAAGTACGCACTGTCCCAGGTGGTGGTGTTGACGTGGCACACGGCGACGGCAGTGGCGCCGCCCAGGCCCACGTCGGCCGTCAGCTCGCTGCAGGCGCGGAGGGTGTCGGCGACCTGCGCCGCCTTGTCGGATCCAGGGAGGATGCCGAACATGGCGAGGATGGCGTCCATGGCGCGGAGGTCGAACGGCACGGCGTCGCCCTTGTCCTTGTAGATGAACCTTGGCGCCGCCGCGGCCACGCCGTGGTCGCCGTGCGGCAGCGCCAGCTTCGTGCCTTCCGGCAAGACGGCGCCAGGATGCAACTTCTTCATTAAGAAGAGCATCCCGCGCTGGATATGTATGCCTGCAGCTGGATGAGCCAGAGAAGACAAGGCAGCCGGTGGAGTAGGAGGCGCAACACTACGTGGATTCCAGTCGACTGGGTAAGCAGCATCAGTGAATTGGGCCTTGTTACCATTAGAATGTTGAGCAAAGATGCCCGGTGCTTTAGGAGGTGCAACACTACGTGGACTCCATTTTACCGAGTAAGCAGAATCAGTGAATTCGGCCTTCTCACCATTTGGAGAAGCAGGGAAGGTGGCTGGTTGTTTAGGAGGCCCATCAGCACGTGGACTCCACTTGACTGGGTAAGCAGCATCAATGAAGGGAGCATTGCCATTCGGTAGATGATGAGCAACGACCAGCGATGGCGTGGACGGATCCTGATCTGGTTTCCACTTCGCCGGGTATGCAGCATCAGCGAATTGCCCTTCTCCATCTGCTGGAGTATCATGTCCGTGGCCGACGAACGACACCTGCAGGTTGGTGATCTTGTTGTTCGTCCTCGCCGCCTGCGAGCTGTCGTCGACGTACCGGCCGGCCTCCTTCTCCAACTCCGATGTCATCTTCGTCGTCGGGAAGCGGGCCAAGAGACTGCGCGGGGCCCGGGCCGTCGCCGCGTGCGCGCGGCAGCAGCCGGCGGAGAGCGCCGCCGCCAGCAAGAGACAGGGGAGGAAGGACGACGACGACGACGACGCCGCCGCCGCCCGGAGGCTGAAGCGGCGGCGAGCTGCGGCGCACTCGTTGCCCTTGCCCACCATGGTCTCGCCACCACCAGCTTCCTCTAGCTAAACACACGTACTGTGATCAACTCTTTGGAAACGAAATTGAAGGAAAGAAAGCTAGCTAGCTAAACGCTTGCTGCTGCTGCTGCTGCGTTTGGAGCGCGCGGCTATTTATAGGACCGTGAGCGGCGAGCCAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.842247
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0157500.1 2 10898104 T A
Osa02LNT0157500.1 2 10899707 G A
Osa02LNT0157500.1 2 10899855 T A
Osa02LNT0157500.1 2 10900504 A C
Osa02LNT0157500.1 2 10900991 A T
Osa02LNT0157500.1 2 10901974 T C
Osa02LNT0157500.1 2 10901139 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0157500.1 osa-miR443 Translation 5.0 15.622 1 22
Osa02LNT0157500.1 osa-miR1846a-5p Cleavage 5.0 19.024 1 21
Osa02LNT0157500.1 osa-miR1846b-5p Cleavage 5.0 19.024 1 21
Osa02LNT0157500.1 osa-miR1846c-5p Cleavage 5.0 19.024 1 21
Osa02LNT0157500.1 osa-miR396f-5p Cleavage 4.5 24.756 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0157500.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0157500.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0157500.1 2 tgw2 Morphological trait Seed RM290 RM550
Osa02LNT0157500.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus