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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0158000.1

TAGATGGCAGGTAGATGGATTAACAAATCATCCAAAAAAATATATAGCTCCGGCCTAGTTGATTGCATGAAAAAATTGGCGTTGAGATACCATGGCCTTAATTACTTGGATTTAAACTTGAGTACCTAGAATCGTTTACATAGAATGAGGTAACCTCCCAGGTACTCGTGTTCAAGGGTACAGTTGGCATTTTCCAGTTCCAGCACATACTGTACATTCCTCAACATTACCTGCAACGTGTCTCAGGCAGTACTTGATGCGATCATTCATAACATCCACCATAAGCTCATGCAATCCAAGAGGGGCAGTGACAACATAAGTTATGTTTGAGTGCTCCTTAGATGCTTCCGCAGCTAAAGCAGGGATATCTTGTTTCCAGTGTCGTCCAGGTGAAAGAAAATATGGACTGACAATAACACGGGACGCTCCTTGTTGCACACATTTTCCAAATGCATCTTTAATAGTAGGCTCAGCTAGCTCCATATGAGCAGGCTCAACGATCTTGTAACCGGTCCTCGCCCTGAACATGGCAACAAAATCATTTAGCATGAGATTGGATTCTTCACGCCGTGACCCATGGTCAACAATGATCACACCATCCTTCTCACCAACGGTGCAACTCTCTCCTTGGGCCGTTTCTGAGCTGAAACCAGAATTCGGCTTGGCACTCATGACTATGTTTCCAATGTTGAGTCCAATTCTCGGCAACTTGACAAAGCTAGCAGAATTCCTGACATCAATGCTCCATGATGTCAGTTTGTTTGTATGGGTCGCACTTAAGGGTTGGAAGGGGATTGAGATAGTATGCATAGACCACCCTCCAAAGGCCCAGGAGCACCACTATGTGATTCTTGTTGAAAATAGGTGATGACAGGGCAGTGGCGGATGCCGAATTCCACAGCTATGGATTGGACGGTGGGGGATGGATGGATTCGTTGCCTTGATTCACTCACCGCCTCTGGAGCACAGGGGTGAGTAGCCTCTCTCGCTCTCAAAAGCTGCGGCGCGCCCCGGTTTGCTCCTCCCGCGCGCTCTGAGCCGTGGTTGGCCGTCAACCCCACCGCGTCCGCCGTCCGCCGCCGGGGGAACGGGAGAGGAGTGGTTGGGAGGGGAGACCTCGTTAGGGGATGGGCGCTGGATTTGTTTTGCCGCAGCAGCCAATGGCGAGAGAATGACGACGTTGTCCAACCGAGTTTCAGCGAGGAGGGGGTCGCGAGCCGCCGACTCAGGCTCGCCTCGCGCTCGCACGGTCGCCGCCGCTGCCTTCTTTCGAT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.922278
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0158000.1 2 11354839 G T
Osa02LNT0158000.1 2 11354075 T C
Osa02LNT0158000.1 2 11356786 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0158000.1 osa-miR5537 Translation 5.0 14.02 1 22
Osa02LNT0158000.1 osa-miR319a-3p Cleavage 5.0 20.909 1 21
Osa02LNT0158000.1 osa-miR5071 Cleavage 5.0 21.658 1 21
Osa02LNT0158000.1 osa-miR5524 Cleavage 4.0 12.541 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0158000.1 2 tgw2 Morphological trait Seed RM290 RM550
Osa02LNT0158000.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0158000.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0158000.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus